View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21081_low_11 (Length: 396)

Name: NF21081_low_11
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21081_low_11
NF21081_low_11
[»] chr7 (4 HSPs)
chr7 (200-381)||(6203912-6204093)
chr7 (297-380)||(6187516-6187599)
chr7 (297-380)||(6194032-6194115)
chr7 (201-244)||(17298587-17298630)
[»] chr8 (2 HSPs)
chr8 (201-251)||(24948591-24948641)
chr8 (200-258)||(45163934-45163992)
[»] chr5 (3 HSPs)
chr5 (200-240)||(38256928-38256968)
chr5 (200-263)||(1054258-1054321)
chr5 (201-258)||(14536126-14536183)
[»] chr4 (2 HSPs)
chr4 (200-251)||(40835528-40835579)
chr4 (208-244)||(19277971-19278007)
[»] chr6 (1 HSPs)
chr6 (208-244)||(2281968-2282004)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 200 - 381
Target Start/End: Complemental strand, 6204093 - 6203912
Alignment:
Q  200 ctatgttttgtgagtgtgcctcaatcattttgatttggggttgtgttcatctcagacttcctctccaaccatattagtgttaggaaactatgcaaaattt 299  Q
    |||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6204093 ctatgttttgtgagtgtgtctaaatcattttgatttggggttgtattcatctcagacttcctctccaaccatattagtgttaggaaactatgcaaaattt 6203994  T
Q  300 ctctaatgagactagtgaaagtgaaataaaggctaacacacataattaataatagtgtttggccatttatgtctaatctctg 381  Q
    ||||||| ||||  ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||    
T  6203993 ctctaataagaccggtgaaagtgaaataaaggctaacacacctaattgataatagcgtttggccatttatgcctaatctctg 6203912  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 6187599 - 6187516
Alignment:
Q  297 tttctctaatgagactagtgaaagtgaaataaaggctaacacacataattaataatagtgtttggccatttatgtctaatctct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  6187599 tttctctaatgagactagtgaaagtgaaataaaggctaacacacataattgataatagcgtttggccatttatgtctaatctct 6187516  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 297 - 380
Target Start/End: Complemental strand, 6194115 - 6194032
Alignment:
Q  297 tttctctaatgagactagtgaaagtgaaataaaggctaacacacataattaataatagtgtttggccatttatgtctaatctct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  6194115 tttctctaatgagactagtgaaagtgaaataaaggctaacacacataattgataatagcgtttggccatttatgtctaatctct 6194032  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 17298630 - 17298587
Alignment:
Q  201 tatgttttgtgagtgtgcctcaatcattttgatttggggttgtg 244  Q
    |||||||||||||||||||  ||| |||||||||||||||||||    
T  17298630 tatgttttgtgagtgtgcccaaattattttgatttggggttgtg 17298587  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 24948591 - 24948641
Alignment:
Q  201 tatgttttgtgagtgtgcctcaatcattttgatttggggttgtgttcatct 251  Q
    ||||||||||||||||| |  ||||||||||||||||||||||||||||||    
T  24948591 tatgttttgtgagtgtgtccaaatcattttgatttggggttgtgttcatct 24948641  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 45163992 - 45163934
Alignment:
Q  200 ctatgttttgtgagtgtgcctcaatcattttgatttggggttgtgttcatctcagactt 258  Q
    ||||||||||||||||||||  |||||||||||| |||||||||| |||||| ||||||    
T  45163992 ctatgttttgtgagtgtgcccaaatcattttgatctggggttgtgctcatctaagactt 45163934  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 38256968 - 38256928
Alignment:
Q  200 ctatgttttgtgagtgtgcctcaatcattttgatttggggt 240  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  38256968 ctatgttttgtgagtgtgcctaaatcattttgatttggggt 38256928  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 1054258 - 1054321
Alignment:
Q  200 ctatgttttgtgagtgtgcctcaatcattttgatttggggttgtgttcatctcagacttcctct 263  Q
    |||||| |||||||||||||  |||||||||||||| ||||||||  ||||| |||||| ||||    
T  1054258 ctatgtcttgtgagtgtgcccaaatcattttgatttagggttgtgcccatcttagactttctct 1054321  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 14536183 - 14536126
Alignment:
Q  201 tatgttttgtgagtgtgcctcaatcattttgatttggggttgtgttcatctcagactt 258  Q
    ||||||||||||||||||   ||||||||||||| |||||||||  ||||| ||||||    
T  14536183 tatgttttgtgagtgtgctcaaatcattttgattcggggttgtgcccatctaagactt 14536126  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 40835528 - 40835579
Alignment:
Q  200 ctatgttttgtgagtgtgcctcaatcattttgatttggggttgtgttcatct 251  Q
    |||||||||||||||||| |  ||||||||||||||||||||||| ||||||    
T  40835528 ctatgttttgtgagtgtgtccaaatcattttgatttggggttgtgctcatct 40835579  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 19277971 - 19278007
Alignment:
Q  208 tgtgagtgtgcctcaatcattttgatttggggttgtg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  19277971 tgtgagtgtgcctaaatctttttgatttggggttgtg 19278007  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 2281968 - 2282004
Alignment:
Q  208 tgtgagtgtgcctcaatcattttgatttggggttgtg 244  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  2281968 tgtgagtgtgcctaaatctttttgatttggggttgtg 2282004  T

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