View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_low_12 (Length: 343)
Name: NF21081_low_12
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 48 - 336
Target Start/End: Original strand, 35355138 - 35355426
Alignment:
| Q |
48 |
tttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacagtgcataaatcc |
147 |
Q |
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|||||| |||||||||||| | |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355138 |
tttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatcc |
35355237 |
T |
|
| Q |
148 |
acagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355238 |
acagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgc |
35355337 |
T |
|
| Q |
248 |
gtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttccctatgctt |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
35355338 |
gtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatgtggccatttacaatgttctctatgctt |
35355426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 35370554 - 35370873
Alignment:
| Q |
17 |
aagtccatatactaatttattttcttcttggtttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35370554 |
aagtccatatactaatttattttcttcttggtttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgta |
35370653 |
T |
|
| Q |
117 |
tgactacatttatggtacagtgcataaatccacagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacat |
216 |
Q |
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|||||||||||||||||| || ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35370654 |
tgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacat |
35370753 |
T |
|
| Q |
217 |
ttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccat |
316 |
Q |
| |
|
||||| ||| || |||| || |||||| | ||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||| | |
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| T |
35370754 |
ttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccct |
35370853 |
T |
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| Q |
317 |
ttacaatgttccctatgctt |
336 |
Q |
| |
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||||||||||| |||||||| |
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| T |
35370854 |
ttacaatgttctctatgctt |
35370873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 48 - 325
Target Start/End: Original strand, 35381152 - 35381429
Alignment:
| Q |
48 |
tttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacagtgcataaatcc |
147 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||||||||| || || |||||||| |
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| T |
35381152 |
tttccacaggtttcactcattgcatcacaccaaatttaggtctaattactcactcttcatgcctatatatgactacatttatggcaccgtagataaatcc |
35381251 |
T |
|
| Q |
148 |
acagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgc |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| | | |
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| T |
35381252 |
acagatgctacatatgaagcctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttagttccatctatcaattac |
35381351 |
T |
|
| Q |
248 |
gtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgt |
325 |
Q |
| |
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||||||||||| |||| ||||| |||||||||||||||||||||||||| ||| | ||||| ||||| |||||||||| |
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| T |
35381352 |
gtttaggctttacttcattagcctccaatcctcaaacatctaaatggtacctatatttaatgtggccctttacaatgt |
35381429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 70 - 336
Target Start/End: Complemental strand, 19629499 - 19629233
Alignment:
| Q |
70 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacct |
169 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||| || ||||| || |||||||||||||||||||||||| || |||||||||||||||||||||| | | |
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| T |
19629499 |
catcacacaaaatttaggtcaaattactcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacagatgctacatatgaatctt |
19629400 |
T |
|
| Q |
170 |
cattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagc |
269 |
Q |
| |
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|||| ||||| | |||| |||||||||||||| ||||||||||||||||| ||||||||||| || | |||| | || ||||| |||||||||||||| |
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| T |
19629399 |
gtttgaagagacaagaggaatcaccagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttagc |
19629300 |
T |
|
| Q |
270 |
ttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttccctatgctt |
336 |
Q |
| |
|
||||| |||||||| |||||||||||||| | ||||| ||||| |||||| ||| | |||||||| |
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|
| T |
19629299 |
ctccaaccctcaaacttctaaatggtatctcaatttaatgtggccttttacattgtgctctatgctt |
19629233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 55 - 336
Target Start/End: Original strand, 19685137 - 19685418
Alignment:
| Q |
55 |
aggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacagtgcataaatccacagatg |
154 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||| |||||||||||| || ||||| || |||||| ||||||||||||| ||| ||| |||| |||||| |
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| T |
19685137 |
aggtttcactcgctgcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcagatg |
19685236 |
T |
|
| Q |
155 |
ctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttagg |
254 |
Q |
| |
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||||||||||| | | | || ||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||| || | |||| | |||||||| |
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|
| T |
19685237 |
ctacatatgaagcttgttcgaagagacaagaggagtcaccagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagg |
19685336 |
T |
|
| Q |
255 |
ctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttccctatgctt |
336 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| | |||||||| |
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| T |
19685337 |
gcttgcttccttagcctccaaccctcaaacatcgaaatggtatctcaatttaatgtggccttttacaatgtgctctatgctt |
19685418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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