View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_low_13 (Length: 337)
Name: NF21081_low_13
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 49817737 - 49817964
Alignment:
| Q |
14 |
atgaactacttgattaatggctaaattcaatatttttcccctaaataatttatgagtttcatattactcctctaattaataaacattttgtttttgtcct |
113 |
Q |
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| T |
49817737 |
atgaactacttgattaatagctaaattcaatattttttccctaaataatttatgagtttcatattagtcctctaattaataaacattttgtttttgtcct |
49817836 |
T |
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| Q |
114 |
ttaaatatattttcattagtcaatttggtcttaagccgttaattttaacttaatacctataaggtggatcaacatcgattttcagatcatgcaagaccat |
213 |
Q |
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| T |
49817837 |
ttaaatatattttcattactcaatttgttctcaagccgttaattttaacttaatacctataaggtggaccaacatcgattttcagatcatgcaaaaccat |
49817936 |
T |
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| Q |
214 |
gaatctaatcatgaaccattaacatata |
241 |
Q |
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| T |
49817937 |
gaatctaatcatgaaccatcaacatata |
49817964 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 30826663 - 30826748
Alignment:
| Q |
53 |
cctaaataatttatgagtttcatattactcctctaattaataaacattttgtttttgtcctttaaatatattttcattagtcaattt |
139 |
Q |
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| T |
30826663 |
cctaaataatttatgagtttcatttgagtctcttaattaataaaagttatatttttgtcctttaaatata-tatcattagtcaattt |
30826748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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