View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_low_18 (Length: 259)
Name: NF21081_low_18
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 3359544 - 3359777
Alignment:
| Q |
16 |
gtagtcactgtcataaagaacaacatcattaccatcaatttcatcctggcccggttgcatcgccctccaagtaattttactgttcgtcggcttgtttaag |
115 |
Q |
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| T |
3359544 |
gtagtcactgtcataaagaacaacatcattaccatcaatttcatcctggcccggttgcatcgccctccaagtaattttactgttcgtcggctcgtttaag |
3359643 |
T |
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| Q |
116 |
actgtatcagcagtccatgtttccggtttacgctgcctcttggttgatatattcatagacgtacttggaataactgatctgggactgttaagtggttctc |
215 |
Q |
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| T |
3359644 |
actgtataagcagtccatgtttccggtttacgctgcctcttggttgatacattcatagacgtacttggaataactgatgtgggactgttaagtggttctc |
3359743 |
T |
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| Q |
216 |
tagcaagacatgcctcaaattcaggtttcttctt |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3359744 |
tagcaagacatgcctcaaattcaggtttcttctt |
3359777 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 22067262 - 22067183
Alignment:
| Q |
17 |
tagtcactgtcataaagaacaacatcattaccatcaatttcatcctggcccggttgcatcgccctccaagtaattttact |
96 |
Q |
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|||||||||||||||||||| || | |||||| |||||||||| ||||||| ||| | ||||||||||||||| |||| |
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| T |
22067262 |
tagtcactgtcataaagaacgccagctttaccaccaatttcatcgtggcccgattgtacagccctccaagtaattatact |
22067183 |
T |
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