View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21081_low_2 (Length: 697)
Name: NF21081_low_2
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_low_2 |
 | |
|
| [»] scaffold0024 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 295 - 679
Target Start/End: Complemental strand, 10305613 - 10305230
Alignment:
| Q |
295 |
ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10305613 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
10305514 |
T |
|
| Q |
395 |
tatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga |
494 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10305513 |
tatctctccccttgtttcaaactgttccactccatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga |
10305414 |
T |
|
| Q |
495 |
caaagttgcctttgcttattgtctttttctgaacatacagtgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagttttgagtggnnn |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10305413 |
caaagttgcctttgcttattgtctttttctgagcatacagtgtttgcttctgccttcatgtgtcttcatatgtagttggtgaccaagttttgagtgg-aa |
10305315 |
T |
|
| Q |
595 |
nnnnnnnggtagagagtaataactgtgaaatggaaagcggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
679 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10305314 |
aaaaaaaggtagagagtaataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
10305230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 287 - 679
Target Start/End: Original strand, 4251232 - 4251625
Alignment:
| Q |
287 |
ataataaaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgtttt-atctctttttggt |
385 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4251232 |
ataaaaaaggaaaatgcttaacatcgcaacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgtttttatctctttttggt |
4251331 |
T |
|
| Q |
386 |
gataccatttatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagttta |
485 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4251332 |
cataccatttatctctccccttgtttcctgttgttccactccatctccagattctcttcattgtattattttataggttctcttcaattaccaaagttta |
4251431 |
T |
|
| Q |
486 |
gagacgtgacaaagttgcctttgcttattgtctttttctgaacatacagtgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagtttt |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4251432 |
gagacgtgacaaagttgcctttgcttattgtctttttctgagcatacagtgtttgcttcaaccttcatgtgtcttcatatgtagttggtgaccaagtttt |
4251531 |
T |
|
| Q |
586 |
gagtggnnnnnnnnnnggtagagagtaataactgtgaaatggaaagcggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
679 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4251532 |
gagtggaaaaaaaaaaggtagagagtaataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
4251625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 295 - 679
Target Start/End: Complemental strand, 51005434 - 51005052
Alignment:
| Q |
295 |
ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
394 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51005434 |
ggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagctcaaaagcggtgatttccttgttttatctctttttggtcataccatt |
51005335 |
T |
|
| Q |
395 |
tatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga |
494 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51005334 |
tatctctccccttgttttctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga |
51005235 |
T |
|
| Q |
495 |
caaagttgcctttgcttattgtctttttctgaacatacagtgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagttttgagtggnnn |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51005234 |
caaagttgcctttgcttattgtctttttctgagcatatagtgtttgcttcagccttcatgtgtcttcatatgtagttggtgaccaagttttgagtgg--a |
51005137 |
T |
|
| Q |
595 |
nnnnnnnggtagagagtaataactgtgaaatggaaagcggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
679 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51005136 |
aaaaaaaggtagagagtaataactgtgaaatggaaaatggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
51005052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 293 - 679
Target Start/End: Original strand, 4246071 - 4246455
Alignment:
| Q |
293 |
aaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatacca |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
4246071 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacatgagaaaagctcaaaagcggtgatttctttgttttatctctttttggtcatacca |
4246170 |
T |
|
| Q |
393 |
tttatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4246171 |
tttatctctccccttgtttcctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgt |
4246270 |
T |
|
| Q |
493 |
gacaaagttgcctttgcttattgtctttttctgaacatacagtgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagttttgagtggn |
592 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4246271 |
gagaaagttgtctttgcttattgtctttttctgagcatacaatgtttgcttcagccttcatgtgtcttcatatgtagttggtgaccaagttttgagtgg- |
4246369 |
T |
|
| Q |
593 |
nnnnnnnnnggtagagagtaataactgtgaaatggaaagcggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
679 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4246370 |
-aaaaaaaaggtagagagtaataactgtgaaatggaaaacggcaaaaacttataaaacataattcgtgggatattcgcgagactttt |
4246455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 295 - 679
Target Start/End: Complemental strand, 13761685 - 13761303
Alignment:
| Q |
295 |
ggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgataccatt |
394 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13761685 |
ggaaaatgcttaacatcacgacaaaagtttcacaaatatcacacgagaaaagctcaaaagtggtgatttccttgttttatctctttttggtcataccatt |
13761586 |
T |
|
| Q |
395 |
tatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtga |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13761585 |
tatctctccccttgtttcctgctgttccacttcatctccagattctcttcattgtattattttattggttctcttcaattaccaaagtttaaagacgtga |
13761486 |
T |
|
| Q |
495 |
caaagttgcctttgcttattgtctttttctgaacatacagtgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagttttgagtggnnn |
594 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13761485 |
caaaattgcctttgcttattgtctttttctgagcatacagtgtctgcttcagccttcatgtgtcttcatatgtagttggtgaccaagttttgagtgg--a |
13761388 |
T |
|
| Q |
595 |
nnnnnnnggtagagagtaataactgtgaaatggaaagcggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
679 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
13761387 |
aaaaaaaggtagagagtaataactttgaaatggaaaacggcaaaagcttataaaacataatttgtgagatattcgcgaaactttt |
13761303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 42158044 - 42157759
Alignment:
| Q |
9 |
aggagcacagattaccaaaacttctagctgaataaccaaatctacaacatgtcctaaattctaacggttctgttcaaaaacaaaactctgctgctacaag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42158044 |
aggagcacagattaccaaaacttctagctgaataaccaaatctacaacatgtcctaaattctaacggttctgttcaaaaacgaaactctgctgctacaag |
42157945 |
T |
|
| Q |
109 |
atatatatcaatttgaaagtaaagatggataaaatttaaattaatgttttttagatacagagtttgactatctatggaatattgtattaacgttctatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42157944 |
atatatatcaatttgaaagtaaagatggataaaatttaaattaatgttttttagatacagagtttgactatctatggaatattgtattaacgttctatgg |
42157845 |
T |
|
| Q |
209 |
taggactaataatagagatgattgggatgatagtcaaatacaccggtttgcattttgtaacataaaattcataactatataataaa |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42157844 |
taggactaataatagagatgattgggatgatagtcaaatacaccggtttgcattttgtaacataaaattcataactatatgataaa |
42157759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 291 - 679
Target Start/End: Complemental strand, 143220 - 142840
Alignment:
| Q |
291 |
taaaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatac |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
143220 |
taaaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcatatgagaaaagttcaaaagcggtgatttccttgttttatctctttttggtcatac |
143121 |
T |
|
| Q |
391 |
catttatctctccccttgtttcctgctgttccactcaatctccagattctcttcattgtattattttattg--gttctcttcaattaccaaagtttagag |
488 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
143120 |
catttatctcttcccttgtttccagctgttccactccatctccagattctcttcattgtattattttattggtgttctcttcaattaccaaagtttagag |
143021 |
T |
|
| Q |
489 |
acgtgacaaagttgcctttgcttattgtctttttctgaacatacagtgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagttttgag |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||| ||||||| |
|
|
| T |
143020 |
acgtgacaaagttgcctttgcttattgtctttttctgagcatacagtgtttgcttcagccttcatgtgccttcat---------gtgaccaaattttgag |
142930 |
T |
|
| Q |
589 |
tggnnnnnnnnnnggtagagagtaataactgtgaaatggaaagcggcaaaagcttataaaacataattcgtgggatattcgcgagactttt |
679 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
142929 |
tgg-aaaaaaaaaggtggagagtaataactgtgaaatggaaaacggcaaaagcttataaaacataattcgtgggatattcgcgatactttt |
142840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 435 - 678
Target Start/End: Original strand, 1814123 - 1814366
Alignment:
| Q |
435 |
gattctcttcattgtattattttattggttctcttcaattaccaaagtttagagacgtgacaaagttgcctttgcttattgtctttttctgaacatacag |
534 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |
|
|
| T |
1814123 |
gattctctttattgtattattttattggttctctttaattaccaaagtttagagacgtgacaaagttgcatttgcttattgtctttttctcagcatacag |
1814222 |
T |
|
| Q |
535 |
tgtttgcttcagccttcatgtgtcttcatatgtagttggtcaccaagttttgagtggnnnnnnnnnnggtagagagtaataactgtgaaatggaaagcgg |
634 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||| |
|
|
| T |
1814223 |
tgtttgcttcagccttcatgtgtcttcatatgtagttggtgaccaagttttgagtggaaaaaaaaaaggtaaagagtaataactgtgaaatggaaaacgg |
1814322 |
T |
|
| Q |
635 |
caaaagcttataaaacataattcgtgggatattcgcgagacttt |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1814323 |
caaaagcttataaaacataattcgtgggatattagcgagacttt |
1814366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 293 - 393
Target Start/End: Original strand, 1814022 - 1814122
Alignment:
| Q |
293 |
aaggaaaatgcttaacatcgcgacaaaaatttcacgaatatcacacaagaaaagctcaaaagcggtgatttccttgttttatctctttttggtgatacca |
392 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||| |||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1814022 |
aaggaaaatgcttaacatcgcgacaaaagtttcacgaatatcacacgagaaaagtttaaaaacggtgatttccttgttttatttctttttggtcatacca |
1814121 |
T |
|
| Q |
393 |
t |
393 |
Q |
| |
|
| |
|
|
| T |
1814122 |
t |
1814122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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