View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21081_low_22 (Length: 242)

Name: NF21081_low_22
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21081_low_22
NF21081_low_22
[»] chr2 (2 HSPs)
chr2 (124-242)||(386270-386388)
chr2 (18-128)||(386150-386245)


Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 386270 - 386388
Alignment:
Q  124 tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  386270 tagtatgcaagaatgaaaaatatatcttgtaaatgagtttcatacgtgttctttcaacatttctagttagagcattatctcgttgaaagtcaaaatgtat 386369  T
Q  224 caaagaagccacaaattat 242  Q
    |||||||||||||||||||    
T  386370 caaagaagccacaaattat 386388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 386150 - 386245
Alignment:
Q  18 aataaaggtagtgggatcataatattgcccttctggtgagtttttagttgacaggtttacatgtatgtaacttacaaatcgatgaaacatgtgggttgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||    
T  386150 aataaaggtagtgggatcataatattgcccttctggtgagtttttagttgacaggtttac---------------aaatcgatgaaacatgtgggttgtt 386234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University