View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_low_23 (Length: 224)
Name: NF21081_low_23
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 35354983 - 35355149
Alignment:
| Q |
20 |
attgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaatgagc |
119 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35354983 |
attgcaactttgagttcattcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagttcaacaatgctaacgagc |
35355082 |
T |
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| Q |
120 |
ttcctaatttctagtgacattccatatgctaattgtttattttgtccgtgatatatttccacaggtt |
186 |
Q |
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| T |
35355083 |
ttcctaatttctagtcacattccatatgctaattgtttattttctccgtgatatatttccacaggtt |
35355149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 35380989 - 35381071
Alignment:
| Q |
20 |
attgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35380989 |
attgcaactttgagttctttcctaagaaactcctctcttactttcccattttaaagtatctctcatacacaccatcgtaagtt |
35381071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 35370427 - 35370509
Alignment:
| Q |
20 |
attgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
102 |
Q |
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| T |
35370427 |
attgcaactttgagttctttcctaagaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtt |
35370509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 19630193 - 19630111
Alignment:
| Q |
20 |
attgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
102 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||| | |||||||||||||| |||||||||||||||||| |
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| T |
19630193 |
attgcaattttgagttctttcctaagaaactcttctcctactttcccctattgaagtatctctcgtacacaccatcgtaagtt |
19630111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 19684633 - 19684715
Alignment:
| Q |
20 |
attgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
102 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
19684633 |
attgcaattttgagttctttcctaagaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgtaagtt |
19684715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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