View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21081_low_26 (Length: 204)

Name: NF21081_low_26
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21081_low_26
NF21081_low_26
[»] chr4 (17 HSPs)
chr4 (74-204)||(24481816-24481946)
chr4 (74-198)||(24481954-24482078)
chr4 (72-204)||(24482050-24482182)
chr4 (83-204)||(24481642-24481763)
chr4 (72-182)||(24481562-24481672)
chr4 (72-177)||(24481741-24481846)
chr4 (131-204)||(24481918-24481991)
chr4 (125-204)||(24482152-24482231)
chr4 (143-200)||(24481416-24481473)
chr4 (164-199)||(24421353-24421388)
chr4 (164-199)||(24470335-24470370)
chr4 (164-199)||(24470527-24470562)
chr4 (161-204)||(24481744-24481787)
chr4 (161-199)||(24477634-24477672)
chr4 (128-168)||(24421402-24421442)
chr4 (128-168)||(24470281-24470321)
chr4 (167-199)||(24477490-24477522)
[»] scaffold1918 (1 HSPs)
scaffold1918 (171-199)||(135-163)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 24481946 - 24481816
Alignment:
Q  74 gtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccat 173  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  24481946 gtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccacctcctccatatgtgtacaagtcacccccacctcctccat 24481847  T
Q  174 atgtgtacaagtcaccacctcctccacctta 204  Q
    |||||||||||||||||||||||||||||||    
T  24481846 atgtgtacaagtcaccacctcctccacctta 24481816  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 24482078 - 24481954
Alignment:
Q  74 gtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccat 173  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24482078 gtgtacaagtcaccacctcctccaccttacgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccat 24481979  T
Q  174 atgtgtacaagtcaccacctcctcc 198  Q
    |||||||||||||||| || |||||    
T  24481978 atgtgtacaagtcacccccacctcc 24481954  T

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Target: chr4; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 24482182 - 24482050
Alignment:
Q  72 atgtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctcc 171  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||    
T  24482182 atgtgtacaagtcaccacctcctccaccttatgtttacccgtctcctcctccaccatcaccgccacctccatatgtatacaagtcacccccacctcctcc 24482083  T
Q  172 atatgtgtacaagtcaccacctcctccacctta 204  Q
    ||| |||||||||||||||||||||||||||||    
T  24482082 atacgtgtacaagtcaccacctcctccacctta 24482050  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 24481763 - 24481642
Alignment:
Q  83 tcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccatatgtgtaca 182  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||| ||| | ||||| ||||| |||||||||||||||||||| |    
T  24481763 tcaccacctcctccaccttatgtttacccatctcctcctccaccatcgcctcctcctccatatatctacaaatcacccccacctcctccatatgtgtata 24481664  T
Q  183 agtcaccacctcctccacctta 204  Q
    ||||||||||||||||||||||    
T  24481663 agtcaccacctcctccacctta 24481642  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 24481672 - 24481562
Alignment:
Q  72 atgtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctcc 171  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||| || || || || ||    
T  24481672 atgtgtataagtcaccacctcctccaccttatgtttacccatctcctcctccaccatcaccacctcctccatatatctacaagtcgccacctcccccacc 24481573  T
Q  172 atatgtgtaca 182  Q
    |||||||||||    
T  24481572 atatgtgtaca 24481562  T

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Target: chr4; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 24481846 - 24481741
Alignment:
Q  72 atgtgtataagtcaccacctcctccatcttatgtttacccgtctcctcctccaccatcaccacctcctccgtatgtatacaagtcaccgccacctcctcc 171  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || ||||| ||    
T  24481846 atgtgtacaagtcaccacctcctccaccttacgtttacccgtctcctcctccaccatcaccacctcctccatacgtatacaaatcaccacctcctccacc 24481747  T
Q  172 atatgt 177  Q
     |||||    
T  24481746 ttatgt 24481741  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 24481991 - 24481918
Alignment:
Q  131 ccacctcctccgtatgtatacaagtcaccgccacctcctccatatgtgtacaagtcaccacctcctccacctta 204  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  24481991 ccacctcctccatatgtgtacaagtcacccccacctcctccatacgtgtacaagtcaccacctcctccacctta 24481918  T

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Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 24482231 - 24482152
Alignment:
Q  125 ccatcaccacctcctccgtatgtatacaagtcaccgccacctcctccatatgtgtacaagtcaccacctcctccacctta 204  Q
    ||||||||||| ||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24482231 ccatcaccaccacctccttatgtctataaatcaccaccacctcctccatatgtgtacaagtcaccacctcctccacctta 24482152  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 24481473 - 24481416
Alignment:
Q  143 tatgtatacaagtcaccgccacctcctccatatgtgtacaagtcaccacctcctccac 200  Q
    ||||| ||||||||||||||||||||||||||||| ||| | ||||| ||||||||||    
T  24481473 tatgtctacaagtcaccgccacctcctccatatgtttacgaatcacctcctcctccac 24481416  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 24421388 - 24421353
Alignment:
Q  164 cctcctccatatgtgtacaagtcaccacctcctcca 199  Q
    |||||||||||||| |||||||||||||||||||||    
T  24421388 cctcctccatatgtctacaagtcaccacctcctcca 24421353  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 24470335 - 24470370
Alignment:
Q  164 cctcctccatatgtgtacaagtcaccacctcctcca 199  Q
    |||||||||||||| |||||||||||||||||||||    
T  24470335 cctcctccatatgtctacaagtcaccacctcctcca 24470370  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 24470527 - 24470562
Alignment:
Q  164 cctcctccatatgtgtacaagtcaccacctcctcca 199  Q
    |||||||||||||| |||||||||||||||||||||    
T  24470527 cctcctccatatgtctacaagtcaccacctcctcca 24470562  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 24481787 - 24481744
Alignment:
Q  161 ccacctcctccatatgtgtacaagtcaccacctcctccacctta 204  Q
    |||||||||||||| || ||||| ||||||||||||||||||||    
T  24481787 ccacctcctccatacgtatacaaatcaccacctcctccacctta 24481744  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 24477672 - 24477634
Alignment:
Q  161 ccacctcctccatatgtgtacaagtcaccacctcctcca 199  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  24477672 ccacctcctccatatgtgtacaagtccccaccacctcca 24477634  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 24421442 - 24421402
Alignment:
Q  128 tcaccacctcctccgtatgtatacaagtcaccgccacctcc 168  Q
    |||||||||||||||||||| |||||||| || ||||||||    
T  24421442 tcaccacctcctccgtatgtgtacaagtccccaccacctcc 24421402  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 24470281 - 24470321
Alignment:
Q  128 tcaccacctcctccgtatgtatacaagtcaccgccacctcc 168  Q
    |||||||||||||||||||| |||||||| || ||||||||    
T  24470281 tcaccacctcctccgtatgtgtacaagtccccaccacctcc 24470321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 24477522 - 24477490
Alignment:
Q  167 cctccatatgtgtacaagtcaccacctcctcca 199  Q
    ||||||||||| |||||||||||||||||||||    
T  24477522 cctccatatgtctacaagtcaccacctcctcca 24477490  T

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Target: scaffold1918 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 163 - 135
Alignment:
Q  171 catatgtgtacaagtcaccacctcctcca 199  Q
    |||||||||||||||||||||||||||||    
T  163 catatgtgtacaagtcaccacctcctcca 135  T

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