View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21081_low_4 (Length: 638)

Name: NF21081_low_4
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21081_low_4
NF21081_low_4
[»] chr4 (6 HSPs)
chr4 (19-272)||(27063009-27063262)
chr4 (19-272)||(27084115-27084368)
chr4 (311-625)||(27062662-27062975)
chr4 (311-625)||(27083767-27084081)
chr4 (316-354)||(21345548-21345586)
chr4 (317-361)||(5654599-5654643)
[»] chr8 (2 HSPs)
chr8 (317-363)||(3508059-3508105)
chr8 (316-354)||(37225758-37225796)
[»] chr5 (3 HSPs)
chr5 (318-352)||(8420035-8420069)
chr5 (317-367)||(18607099-18607149)
chr5 (317-354)||(16434397-16434434)
[»] chr3 (2 HSPs)
chr3 (317-367)||(12704659-12704709)
chr3 (316-352)||(41319327-41319363)
[»] chr6 (2 HSPs)
chr6 (330-371)||(10031590-10031631)
chr6 (310-354)||(29049885-29049929)
[»] chr2 (1 HSPs)
chr2 (316-352)||(44605156-44605192)
[»] chr1 (2 HSPs)
chr1 (318-354)||(30847735-30847771)
chr1 (310-354)||(32340655-32340699)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 27063262 - 27063009
Alignment:
Q  19 tatagggttgaaaatccacacgttacagttgggccttcttgtcttggttgttctaggctttctgcggattatagagagttgggaataagcattggttggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27063262 tatagggttgaaaatccacacgttacagttgggccttcttgtcttggttgttctaggctttctgcggattatagagagttgggaataagcattggttggg 27063163  T
Q  119 cccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattccaaatccg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27063162 cccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattccaaatccg 27063063  T
Q  219 caacatcatctgcctgacaaataagaaaaccaaaacgagttgttagctatgaag 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27063062 caacatcatctgcctgagaaataagaaaaccaaaacgagttgttagctatgaag 27063009  T

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Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 27084368 - 27084115
Alignment:
Q  19 tatagggttgaaaatccacacgttacagttgggccttcttgtcttggttgttctaggctttctgcggattatagagagttgggaataagcattggttggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27084368 tatagggttgaaaatccacacgttacagttgggccttcttgtcttggttgttctaggctttctgcggattatagagagttgggaataagcattggttggg 27084269  T
Q  119 cccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattccaaatccg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27084268 cccggtctaggttccggttcggaccgggcctgaactggatacaatagagacagttctggtatagaatcgtccacaaagtgagacacccattccaaatccg 27084169  T
Q  219 caacatcatctgcctgacaaataagaaaaccaaaacgagttgttagctatgaag 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27084168 caacatcatctgcctgagaaataagaaaaccaaaacgagttgttagctatgaag 27084115  T

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Target: chr4; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 311 - 625
Target Start/End: Complemental strand, 27062975 - 27062662
Alignment:
Q  311 atactaataataatatgaaaaaa-taacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcggatattagcacatgaaatgtttatgcta 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  27062975 atactaataataatatgaaaaaaataacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcagatattagcacatga--tgtttatgcta 27062878  T
Q  410 caaaggtaatgaattcattctttattaaatnnnnnnnnnnnntaatttattgcatgattaaagactcaccggaactgctaaaccactggcaaaaatggag 509  Q
    ||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27062877 caaaggtaatgaattcattctttattaaataaaaaacaaaaataatttattgcatgattaaagactcaccggaactgctaaaccaccggcaaaaatggag 27062778  T
Q  510 ttagactcgccgtctccggcgccggaaaatgttgtggaatttgaattgtcgtcatcttctgttcgttcatgttcagaaccggaggtggtgctgtttttct 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27062777 ttagactcgccgtctccggcgccggaaaatgttgtggaatttgaattgtcgtcatcttcggttcgttcatgttcagaaccggaggtggtgctgtttttct 27062678  T
Q  610 catgttcttcctcttc 625  Q
    ||||||||||||||||    
T  27062677 catgttcttcctcttc 27062662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 311 - 625
Target Start/End: Complemental strand, 27084081 - 27083767
Alignment:
Q  311 atactaataataatatgaaaaaat--aacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcggatattagcacatgaaatgtttatgct 408  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  27084081 atactaataataatatgaaaaaaataaacataattcaatgtaatcaaacgtgttgtgtcagtgacatgtgtcagatattagcacatga--tgtttatgct 27083984  T
Q  409 acaaaggtaatgaattcattctttattaaatnnnnnnnnnnnntaatttattgcatgattaaagactcaccggaactgctaaaccactggcaaaaatgga 508  Q
    |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27083983 acaaaggtaatgaattcattctttattaaataaaaaacaaaaataatttattgcatgattaaagactcaccggaactgctaaaccaccggcaaaaatgga 27083884  T
Q  509 gttagactcgccgtctccggcgccggaaaatgttgtggaatttgaattgtcgtcatcttctgttcgttcatgttcagaaccggaggtggtgctgtttttc 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27083883 gttagactcgccgtctccggcgccggaaaatgttgtggaatttgaattgtcgtcatcttcggttcgttcatgttcagaaccggaggtggtgctgtttttc 27083784  T
Q  609 tcatgttcttcctcttc 625  Q
    |||||||||||||||||    
T  27083783 tcatgttcttcctcttc 27083767  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 21345586 - 21345548
Alignment:
Q  316 aataataatatgaaaaaataacataattcaatgtaatca 354  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  21345586 aataataatttgaaaaaataacataactcaatgtaatca 21345548  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 5654643 - 5654599
Alignment:
Q  317 ataataatatgaaaaaataacataattcaatgtaatcaaacgtgt 361  Q
    |||||||| ||| ||||| ||||||||||||||||||| ||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 3508059 - 3508105
Alignment:
Q  317 ataataatatgaaaaaataacataattcaatgtaatcaaacgtgttg 363  Q
    |||||||| ||| ||||||||||||||||||||||||| | ||||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatcatatgtgttg 3508105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 37225796 - 37225758
Alignment:
Q  316 aataataatatgaaaaaataacataattcaatgtaatca 354  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  37225796 aataataatttgagaaaataacataattcaatgtaatca 37225758  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 8420035 - 8420069
Alignment:
Q  318 taataatatgaaaaaataacataattcaatgtaat 352  Q
    ||||||| |||||||||||||||||||||||||||    
T  8420035 taataatttgaaaaaataacataattcaatgtaat 8420069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 18607149 - 18607099
Alignment:
Q  317 ataataatatgaaaaaataacataattcaatgtaatcaaacgtgttgtgtc 367  Q
    |||||||| ||| ||||||||||||||||||||||||| | |||| |||||    
T  18607149 ataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtc 18607099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Complemental strand, 16434434 - 16434397
Alignment:
Q  317 ataataatatgaaaaaataacataattcaatgtaatca 354  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  16434434 ataataatttgaaaaaataacataattcaatataatca 16434397  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 12704709 - 12704659
Alignment:
Q  317 ataataatatgaaaaaataacataattcaatgtaatcaaacgtgttgtgtc 367  Q
    |||||||| ||||||||| ||||||||||||||||||| | |||| |||||    
T  12704709 ataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtc 12704659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 41319363 - 41319327
Alignment:
Q  316 aataataatatgaaaaaataacataattcaatgtaat 352  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  41319363 aataataatttgaaaaaatgacataattcaatgtaat 41319327  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 10031590 - 10031631
Alignment:
Q  330 aaaataacataattcaatgtaatcaaacgtgttgtgtcagtg 371  Q
    ||||| ||||||||||||||||||| | ||||||||||||||    
T  10031590 aaaatgacataattcaatgtaatcacaagtgttgtgtcagtg 10031631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 29049885 - 29049929
Alignment:
Q  310 gatactaataataatatgaaaaaataacataattcaatgtaatca 354  Q
    |||| |||||||||| ||| ||||| |||||||||||||||||||    
T  29049885 gataataataataatttgagaaaattacataattcaatgtaatca 29049929  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 44605192 - 44605156
Alignment:
Q  316 aataataatatgaaaaaataacataattcaatgtaat 352  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  44605192 aataataatttgagaaaataacataattcaatgtaat 44605156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 30847771 - 30847735
Alignment:
Q  318 taataatatgaaaaaataacataattcaatgtaatca 354  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatca 30847735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 32340699 - 32340655
Alignment:
Q  310 gatactaataataatatgaaaaaataacataattcaatgtaatca 354  Q
    ||||||||||||||| ||||||||| |||||||| |||| |||||    
T  32340699 gatactaataataatttgaaaaaatgacataatttaatgcaatca 32340655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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