View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21081_low_8 (Length: 458)
Name: NF21081_low_8
Description: NF21081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21081_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 446
Target Start/End: Complemental strand, 8986075 - 8985633
Alignment:
| Q |
11 |
cacagattggactaaaccattatgttctagccaaaacaaaagttcatgtataatct-ggaatgcacataccgatcccaacttttttatcctctttggaaa |
109 |
Q |
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| T |
8986075 |
cacaaattgaactaaaccattatgttctagccaaagcaaaagtttatgtataatcttggaatgcacataccgatcccaactttgttatcctctttgaaaa |
8985976 |
T |
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| Q |
110 |
aagatgcatctacattacatttaaatatcccttattgtggcttcaaccgttttgcccttccaacatgtattataggtgcattcactgaatt-----ccat |
204 |
Q |
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| T |
8985975 |
aggatgcatctacattacatttaaatatcatttgttgtggcttcaaccgttttgcccttccaacatgtattataggtgcattcactgaattgtgtaccat |
8985876 |
T |
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| Q |
205 |
ttgagttgccaaccattggtcaagcatatgttttgctctgtccaccacattggtttcattaactttatcac--tccaaatcatattatttctttgcttcc |
302 |
Q |
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| T |
8985875 |
ttgagttgccaaccactggtcaagcatatgttttgctctgtccaccacattggcttcattaactttatcactttccaaatcatattatttctttgcttcc |
8985776 |
T |
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| Q |
303 |
atatactctaaaggatacag-nnnnnnnggcatcaaacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttcc |
401 |
Q |
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| T |
8985775 |
atatactctaaaggatacagaaaaaaagggcatcaaacaagccaatcttttttatgtaacctttgatccatcgcccatctaaattacgtaaaaggctt-c |
8985677 |
T |
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| Q |
402 |
acacgctgctatatcgctatatcccccttgttccaactcaagaag |
446 |
Q |
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| T |
8985676 |
acacgctgctatatcgctat-ttccccttgttccaactcaagaag |
8985633 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 1324689 - 1324591
Alignment:
| Q |
332 |
catcaaacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttccacacgctgctatatcgctatatcccccttg |
431 |
Q |
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| T |
1324689 |
catcacacgagccaatcttcttaatgtaacatttgatccaccgtccatctgaattgtg-aaaagacttccacaccctactatgtcgttat-tcccccttg |
1324592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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