View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_high_9 (Length: 385)
Name: NF21082_high_9
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 100 - 369
Target Start/End: Complemental strand, 7141216 - 7140947
Alignment:
| Q |
100 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcc |
199 |
Q |
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| T |
7141216 |
tataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggctaccactttgttggactctcaaaagaacatcc |
7141117 |
T |
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| Q |
200 |
acaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatctaagattttgtctaccc |
299 |
Q |
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| T |
7141116 |
acaagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatccaagattttgtctaccc |
7141017 |
T |
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| Q |
300 |
ttttgtgaattttctcaacannnnnnnncatccctgttagtacatgaataagtttcatcgaaggaaacaa |
369 |
Q |
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| T |
7141016 |
ttttgtgaattttctcaacattttttttcatccctgttagtacatgaataagtttcattgaaggaaacaa |
7140947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 315
Target Start/End: Complemental strand, 7153046 - 7152832
Alignment:
| Q |
101 |
ataagttaagtgttactaacccaaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatcca |
200 |
Q |
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| T |
7153046 |
ataagttcattgtaactaacccaaatcacagctttgatgttgttggttgttattttgatatcaaggttatcactttgttggactcgcaaaagaacatcta |
7152947 |
T |
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| Q |
201 |
caagatcttccttctcaatttcactcttgttaccttcatttcctcttgctctcttttcttgatgttttctcacaacattatctaagattttgtctaccct |
300 |
Q |
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| T |
7152946 |
gaagatcttcgttatcaacttcattgttgtcgtcttcttttgctctttctcgcttttcttgatgttgtctaataatgttttcaatgattttgtctacacg |
7152847 |
T |
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| Q |
301 |
tttgtgaattttctc |
315 |
Q |
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| T |
7152846 |
cttgtgaattttctc |
7152832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 7141277 - 7141214
Alignment:
| Q |
11 |
cataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat |
74 |
Q |
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| T |
7141277 |
cataggctaaaatatttgtgcagaatttaatggaaaaacaaaggaaataggaaattagggttat |
7141214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 210
Target Start/End: Complemental strand, 7130839 - 7130752
Alignment:
| Q |
123 |
aaatcacagctttgatgttgttgattgtcaattggacatcaaggcttccactttgttggactctcaaaagaacatccacaagatcttc |
210 |
Q |
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| T |
7130839 |
aaatcacagctttgatgttgctagttgttattgggatttcaaggcttccactttcttggattctcaaaagcacatcaacaagatcttc |
7130752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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