View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_1 (Length: 762)
Name: NF21082_low_1
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 46355614 - 46356015
Alignment:
| Q |
15 |
acaattaatgtggaaaacttggaccaatagaagttcaatatcccatctttggaaaatttacttaagatgccttgtttctgttttatagccgtttgaccgt |
114 |
Q |
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| T |
46355614 |
acaattaatgtggaaaacttggaccaatagaagttcaatatcccatctttggaaaatttacttaagatgccttgtttctgttttatagccgtttgaccgt |
46355713 |
T |
|
| Q |
115 |
agttcatcatattggatgaccaataatacacaaagtatatcaacggcaagattttaaataaagttccttaaaaccttgatcaatggtnnnnnnnnttgga |
214 |
Q |
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| T |
46355714 |
agttcatcatattggatgaccaataatacacaaagtatatcaacggcaagattttaaataaagttccttaaaaccttgatcaatggtaaaaaaaaatgga |
46355813 |
T |
|
| Q |
215 |
ccacaaaaccctagcaagaagcttagttaattttagttttacttaggatgctagtttcttggattcaataaccaagcagatataagacatgcttgaacgt |
314 |
Q |
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| T |
46355814 |
ccacaaaaccctagcaagaagcttagttaattttagttttacttaggatgctggtttcttggattcaataaccaagcagatataagacatgcttgaacgt |
46355913 |
T |
|
| Q |
315 |
gtaatttttaaaaagagactttaggacacaaatttttaaccctttttcaatctaaaatctttgaaattccacttttaatatatatactatccgaaattta |
414 |
Q |
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| T |
46355914 |
gtaatttttaaaaagagactttaggacacaaatttttaaccctttttcaatctaaaatctttgaaattccacttttaatatatatactatccgaaattta |
46356013 |
T |
|
| Q |
415 |
ac |
416 |
Q |
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|| |
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| T |
46356014 |
ac |
46356015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 445 - 748
Target Start/End: Original strand, 46356039 - 46356345
Alignment:
| Q |
445 |
gcagattcagtctcatggtcgtgtgcgactagcaaattaaacacattcacttattcctt----atatctgctgcttcatatgtcagttttagtgcaaatt |
540 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46356039 |
gcagattcagtctcatggtcgtgtgtgactagcaaattaaacacattcacttattccttccttatatctgctgcttcatatgtcagttttagtgcaaatt |
46356138 |
T |
|
| Q |
541 |
tcaaagtctatattccctccctttcnnnnnnnattttaagcaaatactattagaaagaatatgataccctctttcttatactttttctcatagatatggt |
640 |
Q |
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| T |
46356139 |
tcaaagtctatattccctccctttctttttt-attttaagcaaatactattagaaagaatatgataccctctttcttatactttttctcatagatatggt |
46356237 |
T |
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| Q |
641 |
taaaaaagagtcttctaattcactgattgagattcgagcttttcaggataatggggtaccattcacacccactgatatcgttatatagtactataattta |
740 |
Q |
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| T |
46356238 |
taaaaaagagtcttctaattcactgattgagattcgagcttttcagggtaatggggtaccattcacacccactgatatcgttatatagtactataattta |
46356337 |
T |
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| Q |
741 |
cacctttg |
748 |
Q |
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|||||||| |
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| T |
46356338 |
cacctttg |
46356345 |
T |
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