View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_10 (Length: 369)
Name: NF21082_low_10
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 3306371 - 3306021
Alignment:
| Q |
1 |
tacgcgcaaaagcagacgatttgatcaatgggagtgcaaatataagaaaaagaaaggattagatgaattcgatcgaaatagaggcgaagatgatattaat |
100 |
Q |
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| T |
3306371 |
tacgcgcaaaagcagacgatttgatcaatgggagtgcaaatataagaaaaagaaaggattagatgaattcgatcaaaatagaggcgaagatgatattaat |
3306272 |
T |
|
| Q |
101 |
gatcctcctgaggttgtaatggagaagagagttttggttgaactagagaagaggttggatgaggaaaaagatgcatttgaaaaacagtgcctacatgtga |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306271 |
gatcctcctgaggttgcaatggagaagagagttttggttgaactagagaagaggttggatgaggaaaaagatgcatttgaaaaacagtgcctacatgtga |
3306172 |
T |
|
| Q |
201 |
ggcaaaaatcattaagttgtctaaaaaataacttgctagagctcttaaaggctatggcagatttttcatttgaatgttctaaaatgtacagtgaattaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306171 |
ggcaaaaatcattaagttgtctaaaaaataacttgctagagctcttaaaggctatgacagatttttcatttgaatgttctaaaatgtacagtgaattaag |
3306072 |
T |
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| Q |
301 |
gtttgtagcacatagattaggatcagcagaaagctgattatgagaattggg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3306071 |
gtttgtagcacatagattaggatcagcagaaagctgattatgagaattggg |
3306021 |
T |
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