View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_12 (Length: 335)
Name: NF21082_low_12
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 37020934 - 37020681
Alignment:
| Q |
16 |
attcacgggaaccacgaaaaagctgagttgtgtgcatattagttcaggataattcaataactgcttttttggcggaaatcagggaggg----gattgaaa |
111 |
Q |
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| T |
37020934 |
attcacgggaaccacgaaaaagctgagttgtgtgcatattagttcaggataattcaataactgcttttttggcggaaatcagggagggagtggattgaaa |
37020835 |
T |
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| Q |
112 |
tcaacggttcgttattgagtcgtttatcaacttttcgtggtattgatcatttcctattttagtttgtgcaagggtgctctatttgtgaaggcagtgcacc |
211 |
Q |
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| T |
37020834 |
tcaacggt-cgttattgattcgtttatcaacttttcgtggt--tgatcatttcccattttagtttgtgcaagggtgctctatttgtgaaggcagtgcacc |
37020738 |
T |
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| Q |
212 |
taaaatatttatgggaaagaggaaaagttggcaagacaatcacatttgactccaaaa |
268 |
Q |
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| T |
37020737 |
taaaatatttatgggaaagaggaaaagttggcaagacaatcacatttgactccaaaa |
37020681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 15870761 - 15870610
Alignment:
| Q |
17 |
ttcacgggaaccacgaaaaagctgagttgtgtgcatattagttcaggataattcaataactgcttttttggcggaaatcagggagg---ggattgaaatc |
113 |
Q |
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| T |
15870761 |
ttcacgggaaccatgaaaaggcttagttgtgtgcacattagttaaggataatttaataattgcttttttggcggaaatcagggaggggtggattgaaatc |
15870662 |
T |
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| Q |
114 |
aacggttcgttattgagtcgtttatcaacttttcgtggtattgatcatttcc |
165 |
Q |
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| T |
15870661 |
aacggttccttgttgaatcataaaccaatttttcgtggtattgatcatttcc |
15870610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 8489136 - 8489054
Alignment:
| Q |
20 |
acgggaaccacgaaaaagctgagttgtgtgcatattagttcaggataattcaataac-tgcttttttggcggaaatcagggag |
101 |
Q |
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|||||||||||||||| ||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
8489136 |
acgggaaccacgaaaatgcttagctgtgtgcatattagttcaggataattcaatatcttgcttttttggcggaaatcagggag |
8489054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 8489028 - 8488966
Alignment:
| Q |
103 |
ggattgaaatcaacggttcgttattgagtcgtttatcaacttttcgtggtattgatcatttcc |
165 |
Q |
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| T |
8489028 |
ggattgaaatcaacggttcgctattgagtcgtagatcaactttccgtggtattgatcatttcc |
8488966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 51861457 - 51861346
Alignment:
| Q |
19 |
cacgggaaccacgaaaaagctgagttgtgtgcatattagttcaggataattcaataactgcttttttggcggaaatcag---ggaggggattgaaatcaa |
115 |
Q |
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||||||| ||| ||||| |||||| ||| ||||||| |||| ||||||||||||| ||| ||||||||||||||||| |||| ||||||||||| |
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| T |
51861457 |
cacgggatccatgaaaatgctgaggtgtatgcatatcagttaaggataattcaatcacttggtttttggcggaaatcaggatggagataattgaaatcaa |
51861358 |
T |
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| Q |
116 |
cggttcgttatt |
127 |
Q |
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||||||||||| |
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| T |
51861357 |
tggttcgttatt |
51861346 |
T |
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