View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_14 (Length: 327)
Name: NF21082_low_14
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 44919776 - 44919475
Alignment:
| Q |
1 |
gactatatctactagcaataagaagagaaagaatttaggcagctggtctgtacagtttgaggctatgtatgtcggaaccttttggactttcctttttggg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44919776 |
gactatatctactagcaataagaagagaaagaatttaggcagctggtctgtacagtttgaggctatgtatgttggaaccttttggactttcctttttggg |
44919677 |
T |
|
| Q |
101 |
tatagtatgattcttcacttgttaattgttgttgattattggttggggttggtaccaccaccaccttgattgccaataaaaggttctattctgggtctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919676 |
tatagtatgattcttcacttgttaattgttgttgattattggttggggttggtaccaccaccaccttgattgccaataaaaggttctattctgggtctct |
44919577 |
T |
|
| Q |
201 |
ctggaatatattatct--tatatagttgggaagaagtagaaaaaatgaatnnnnnnntgggctaatagtatatatcttcacaactatggaacattggtgc |
298 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919576 |
ctggaatatattatattatatatagttgggaagaagtagaaaaa-------------tgggctaatagtatatatcttcacaactatggaacattggtgc |
44919490 |
T |
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| Q |
299 |
atgatgatgctatct |
313 |
Q |
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||||||||||||||| |
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| T |
44919489 |
atgatgatgctatct |
44919475 |
T |
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