View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_16 (Length: 251)
Name: NF21082_low_16
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 53637611 - 53637839
Alignment:
| Q |
1 |
gaaatgatcgtata--tatacacatgattaaagaggtaagagaagattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcgccacg |
98 |
Q |
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| T |
53637611 |
gaaatgatcgtatatatatacacatgattaaagaggtaagagaagattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcgccacg |
53637710 |
T |
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| Q |
99 |
tgaatcattagcgcctggccgcatatattatgttacaataattttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaatctgac |
198 |
Q |
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| T |
53637711 |
tgaatcattagcgtctggccgc--atattatgttacaataattttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaatctgac |
53637808 |
T |
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| Q |
199 |
tatagaaatttagttttaactattaaatcaa |
229 |
Q |
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| T |
53637809 |
tatagaaatttagttttaactattacatcaa |
53637839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 53652314 - 53652379
Alignment:
| Q |
59 |
gaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagcgcctggccgcatat |
124 |
Q |
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|||||||| ||||||||||||||| ||||||| ||||||||||| ||| | || ||||||||||| |
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| T |
53652314 |
gaagatatcacacaggctgtgaaaatccgccagcgccacgtgaagcatgaccgtttggccgcatat |
53652379 |
T |
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