View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_19 (Length: 239)
Name: NF21082_low_19
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53637617 - 53637396
Alignment:
| Q |
1 |
tcatttctgcattctagctccaacatccaaaccaattattattctacattgcttctttccttttctatcaccttttcaagctactaagcactcaagaaaa |
100 |
Q |
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| T |
53637617 |
tcatttctgcattctagctccaacatccaaaccaattattattctacattgcttctttccttttctatcaccttttcaagctactaagcactcaagaaaa |
53637518 |
T |
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| Q |
101 |
agcctaaatatgcctacactggtaaccgaagaatctcaatcccaaattaccaacttgaagcccattttttgtgcttcaggagtgaaaggcaacaaagtta |
200 |
Q |
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| T |
53637517 |
agcctaaatatgcctacactggtaaccgaagaatctcaatcccaaattaccaacttgaagcccattttttgtgcttcaggagtgaaaggcaacaaagtta |
53637418 |
T |
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| Q |
201 |
caactttgtcagcagaggttac |
222 |
Q |
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| T |
53637417 |
caactttgtcctcagaggttac |
53637396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 53651831 - 53651743
Alignment:
| Q |
122 |
gtaaccgaagaatctcaatcccaaattaccaacttgaagcccattttttgtgcttcaggagtgaaaggcaacaaagttacaactttgtc |
210 |
Q |
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|||||||||||||| | |||||||||||||||| |||||| ||||||| ||||||||||||| ||||| || ||| | ||||||||||| |
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| T |
53651831 |
gtaaccgaagaatccctatcccaaattaccaacctgaagctcatttttggtgcttcaggagtcaaaggtaagaaactcacaactttgtc |
53651743 |
T |
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