View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_3 (Length: 528)
Name: NF21082_low_3
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 45 - 509
Target Start/End: Complemental strand, 170801 - 170337
Alignment:
| Q |
45 |
gatcaaaattaaagaacagaataacaatttagtgctttgattggtaacatatcaagcattgaaagaggtattgtccgagcaaaaaatatgatccgtccag |
144 |
Q |
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| T |
170801 |
gatcaaaattaaagaacaaaataacaatttagtgctttggttggtaacatatcaagcattgaaagaggtattgtccgaacaaaaaatatgacccgtccag |
170702 |
T |
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| Q |
145 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctgacaagtgtgcttatgtgtggattcttgactttggt |
244 |
Q |
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| T |
170701 |
ttaagcaaatgtggtccaaaccgatgattttgacagtgaaggagatattatttgtgtttcacctggcaagtgtgcttatgtgtggattcttgactttggt |
170602 |
T |
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| Q |
245 |
tgttcttaccacatgacgctgcaatggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
344 |
Q |
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| T |
170601 |
tgttcttaccacatgacgccgcactggaagtggttcactacattcaagtgaggtatttcaaaattgaaaaagaacttgatttccgtaagtagtctacacg |
170502 |
T |
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| Q |
345 |
aaaacgactacctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
444 |
Q |
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| T |
170501 |
aaaacgactatctcaaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaa |
170402 |
T |
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| Q |
445 |
ggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatg |
509 |
Q |
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| T |
170401 |
ggttgtgaatacctcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatg |
170337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 510
Target Start/End: Original strand, 9837658 - 9837810
Alignment:
| Q |
358 |
caaggatatgagtgctagaaaattatgactctctcataaaagctacattaaaaaggtgctagagaaagttgatatgagcaattcaaaggttgtgaatacc |
457 |
Q |
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| T |
9837658 |
caaggacaagagtgctagaaagttatggctttctaaaaaaagctatgttgaataggtgttagaaaaatttgacatgagcaatttgaagactgcgagtact |
9837757 |
T |
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| Q |
458 |
tcattgacaaatcacttaaaactctcatttgattagtgtccaaagacagatgt |
510 |
Q |
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| T |
9837758 |
tcattgacaaatcattttaagttctcgtttgattagtgtttaaagacaaatgt |
9837810 |
T |
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