View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_4 (Length: 507)
Name: NF21082_low_4
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 220 - 492
Target Start/End: Complemental strand, 41589082 - 41588810
Alignment:
| Q |
220 |
tgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccatgagaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589082 |
tgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccatgagaaa |
41588983 |
T |
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| Q |
320 |
ttggtttatagaaccaagaacagtggaagactcttcatgttcatgatgttggaacatattgtagtcttcctctgagtcatcatcttccatgagaaatttg |
419 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41588982 |
ttggtttatagaaccaagaacagtggaagacacttcatgttcatgatgttggaacatattgtagtcttcctctgagtcatcatcttccatgagaaatttg |
41588883 |
T |
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| Q |
420 |
tttataaaaccaagaacagtggaagtgaattcactcttactttgttcatggagtggatcaacaactcctttgt |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41588882 |
tttataaaaccaagaacagtggaagtgaattcactcttactttgttcatggagtggatcaacaactcctttgt |
41588810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 220 - 492
Target Start/End: Complemental strand, 41556440 - 41556159
Alignment:
| Q |
220 |
tgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccatgagaaa |
319 |
Q |
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||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
41556440 |
tgtgaacaataacatcatgaaatgatttctcagtgagttgaagagcaaaagaatcttggaacatagtgtattctttttcaaagtcttcttccatgagaaa |
41556341 |
T |
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| Q |
320 |
ttggtttatagaaccaagaacagtggaagactcttcatgttcatgatgttggaacatattgtagtcttcctctgagtcatcatcttccatgagaaatttg |
419 |
Q |
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| T |
41556340 |
ttggtttatagaaccaagaacagtggaagactcctcatgttcatgatgttggaacatattgtagtcttcctctatgtcatcatcttccatgagaaatttg |
41556241 |
T |
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| Q |
420 |
tttataaaaccaag---------aacagtggaagtgaattcactcttactttgttcatggagtggatcaacaactcctttgt |
492 |
Q |
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|||||||||||||| || |||||||| ||||||||||| ||| ||||||||| ||||| ||||||||| ||||| |
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| T |
41556240 |
tttataaaaccaagaatagtggaaatagtggaagagaattcactctcactatgttcatggtgtggaccaacaactcttttgt |
41556159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 41589292 - 41589109
Alignment:
| Q |
4 |
ggagtagcaaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagtt |
103 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41589292 |
ggagtagaaaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagtt |
41589193 |
T |
|
| Q |
104 |
agggctatccacaaagttgtagttttgttgatactcatgctggatggaagaagaaggaagagtagtagtaatagcagtaacagcagt |
190 |
Q |
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| T |
41589192 |
agggctatccacaaagttgtagttttgttgatactcatgctggatggaa---gaaggaagagtagtagtaatagcagtaacagcagt |
41589109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 220 - 492
Target Start/End: Complemental strand, 41570137 - 41569865
Alignment:
| Q |
220 |
tgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccatgagaaa |
319 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
41570137 |
tgtgaacaataacatcatgaaatgatttctcagtaagttgaagagcaaaggaatcttggaacatagtgtattctttttcaaagtcttcttccatgagaaa |
41570038 |
T |
|
| Q |
320 |
ttggtttatagaaccaagaacagtggaagactcttcatgttcatgatgttggaacatattgtagtcttcctctgagtcatcatcttccatgagaaatttg |
419 |
Q |
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| |||||||| |||||||| || |||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41570037 |
tcggtttatataaccaagagcattggaagacccatcatgttcattgtgttggaacatattgtagtcttcctctatgtcatcatcttccatgagaaatttg |
41569938 |
T |
|
| Q |
420 |
tttataaaaccaagaacagtggaagtgaattcactcttactttgttcatggagtggatcaacaactcctttgt |
492 |
Q |
| |
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||| | ||||||||| || ||||| ||||||||||| ||||||||||||| ||| |||||||| || ||||| |
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| T |
41569937 |
cttacataaccaagaataggggaagagaattcactctcactttgttcatggtgtgaatcaacaattcttttgt |
41569865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 41556647 - 41556520
Alignment:
| Q |
4 |
ggagtagcaaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagtt |
103 |
Q |
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||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
41556647 |
ggagtagaaaagggttgttattatagttgtatgagtctataattggatcaggttcaaaggagctagtgctgccactgctgaaactataatcactgaagtt |
41556548 |
T |
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| Q |
104 |
agggctatccacaaagttgtagttttgt |
131 |
Q |
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|||||||| |||| |||||||||||||| |
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| T |
41556547 |
agggctatgcacatagttgtagttttgt |
41556520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 41579143 - 41579046
Alignment:
| Q |
220 |
tgtgagcaataacatcatgaaatgatttttcagtaagttgaagagcaaaagaatcttggaactgagtgtactctttttcaaagtcttcttccatgaga |
317 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
41579143 |
tgtgaacaataacatcatgaaatgatttttcagtaagttgaagagtaaaagaatcttggaacatagtgtactccttttcaaagtcttcttccatgaga |
41579046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 41570352 - 41570240
Alignment:
| Q |
17 |
gttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctatccaca |
116 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||| |||| |
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| T |
41570352 |
gttgtaattgtagttgtatgtctctataattggttcaagttcaaaggagctagtgctaccactgctgaaactataatcactgatgtcagggctatgcaca |
41570253 |
T |
|
| Q |
117 |
aagttgtagtttt |
129 |
Q |
| |
|
|| |||||||||| |
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| T |
41570252 |
aatttgtagtttt |
41570240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 41579251 - 41579173
Alignment:
| Q |
42 |
ataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctatccacaaagt |
120 |
Q |
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||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
41579251 |
ataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagttagggctatgcacaaagt |
41579173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 41582763 - 41582725
Alignment:
| Q |
4 |
ggagtagcaaagggttgtaattgtagttgtatgagtcta |
42 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
41582763 |
ggagtagaaaagggttgtaattgtagttgtatgagtcta |
41582725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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