View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21082_low_8 (Length: 398)
Name: NF21082_low_8
Description: NF21082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21082_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 8179631 - 8179735
Alignment:
| Q |
62 |
gtttgtattcgtctgcaagtactggaacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat---gaacttgca |
158 |
Q |
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| T |
8179631 |
gtttgtattcgtctgcaagtgctg-aacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaatgaagaacttgca |
8179729 |
T |
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| Q |
159 |
ctccat |
164 |
Q |
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|||||| |
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| T |
8179730 |
ctccat |
8179735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 347
Target Start/End: Original strand, 8195579 - 8195621
Alignment:
| Q |
305 |
aaaaacaatcaggtagcacatacatttgatgaaattcatttat |
347 |
Q |
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| T |
8195579 |
aaaaacaattaggtagcacatacatttgttgaaattcatttat |
8195621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 8195687 - 8195725
Alignment:
| Q |
349 |
aaatgatttattttttgactattactttttccatcctat |
387 |
Q |
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| T |
8195687 |
aaatgatttattttttgactattactttttccaccctat |
8195725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 8195493 - 8195527
Alignment:
| Q |
243 |
cgttatgagaatgaacttttccgtaaatcaatttt |
277 |
Q |
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| T |
8195493 |
cgttatgagaatgaacttttccttaaatcaatttt |
8195527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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