View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21083_high_2 (Length: 362)
Name: NF21083_high_2
Description: NF21083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21083_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 52919361 - 52919029
Alignment:
| Q |
18 |
tgaatcatgtggaacttgatttatggagatttaaaacttctccagcttcacgccacttgtaatatcaaaaaatttctcatggtagagcattaacttctga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52919361 |
tgaatcatgtggaacttgatttatggagatttaaaacttctccagcttcacgccacttgtaatatcaaaatttttctcatggtagagcattaacttctga |
52919262 |
T |
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| Q |
118 |
actcat--gaattgatttctcaacgtgcttgaagttatgggaggtgctagctggctagctgcaaatttggagtcaaagaatgtaaactcttggaatgatc |
215 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919261 |
actcatatgaatagatttctcaacgtgcttgaagttatgggaggtgctagctggctagctgcaaatttggagtcaaagaatgtaaactcttggaatgatc |
52919162 |
T |
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| Q |
216 |
cacttggagcccttattattggagtccaccagatgaaattatctaactggaaaccagaagaatgtggtgctattgaaaatgagcttattgcatggagtgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52919161 |
cacttggagcccttattattggagtccaccagatgaaattatctaactggaaaccagaagaatgtggtgctattgaaaatgagcttattgcatggagtgc |
52919062 |
T |
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| Q |
316 |
aagaggcctttcagaaagcgaaggtaacttttg |
348 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
52919061 |
aagaggcctttcagaaagcgaaggtaacttttg |
52919029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 35231094 - 35230764
Alignment:
| Q |
18 |
tgaatcatgtggaacttgatttatggagatttaaaacttctccagcttcacgccacttgtaatatcaaaaaatttctcatggtagagcattaacttctga |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
35231094 |
tgaatcatgtggaacttgatttatggagatataaaacttctccagcttcacgccacttgtaatatcaagatttttctcatggtagagcattaacttctga |
35230995 |
T |
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| Q |
118 |
actcat--gaattgatttctcaacgtgcttgaagttatgggaggtgctagctggctagctgcaaatttggagtcaaagaatgtaaactcttggaatgatc |
215 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35230994 |
actcatatgaatagatttctcaacgtgcttgaagttatgggaggtgctagctggctagctgcaaatttggagtcaaagaatgtaaactcttggaatgatc |
35230895 |
T |
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| Q |
216 |
cacttggagcccttattattggagtccaccagatgaaattatctaactggaaaccagaagaatgtggtgctattgaaaatgagcttattgcatggagtgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35230894 |
cacttggagcccttattattggagtccaccagatgaaattatctaactggaaaccagaagaatgtggtgctattgaaaatgaacttattgcatggagtgc |
35230795 |
T |
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| Q |
316 |
aagaggcctttcagaaagcgaaggtaacttt |
346 |
Q |
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||||||| ||||||||||||||||||||||| |
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| T |
35230794 |
aagaggcatttcagaaagcgaaggtaacttt |
35230764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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