View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21083_low_1 (Length: 748)

Name: NF21083_low_1
Description: NF21083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21083_low_1
NF21083_low_1
[»] chr8 (5 HSPs)
chr8 (1-511)||(4903301-4903813)
chr8 (511-735)||(9336312-9336536)
chr8 (60-129)||(1557161-1557230)
chr8 (383-490)||(1556798-1556905)
chr8 (236-303)||(1556987-1557054)
[»] chr7 (3 HSPs)
chr7 (5-511)||(22153748-22154235)
chr7 (5-511)||(22209663-22210150)
chr7 (55-104)||(41450779-41450828)
[»] chr4 (4 HSPs)
chr4 (56-443)||(53561813-53562202)
chr4 (242-442)||(34821645-34821847)
chr4 (58-137)||(38185505-38185584)
chr4 (54-135)||(34821457-34821538)


Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 4903813 - 4903301
Alignment:
Q  1 tgcagcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4903813 tgcagcatgccaaattaatctaccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaa 4903714  T
Q  101 aaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcacc 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  4903713 aaattaaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaatatgtgttgaatcttcaatcgaattattgcacc 4903614  T
Q  201 aaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4903613 aaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcgtgaagaagtttccaagtaaaaaccac 4903514  T
Q  301 cactttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaa 398  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4903513 cactttcgacggtgccgggctcttccaaatatgcgagaaaaccttcctcgggagaccatcaagatcttcctcccttatcatcaatgtttccaatttagaa 4903414  T
Q  399 tacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaat 498  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4903413 tacattgattttaccgaaaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaat 4903314  T
Q  499 catgaagaagtaa 511  Q
    |||||||||||||    
T  4903313 catgaagaagtaa 4903301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 511 - 735
Target Start/End: Original strand, 9336312 - 9336536
Alignment:
Q  511 agtccctggtataagtatacgtgtcatgtattcattattgagggatatttggttaggatatatgcgatcatttattcaggaacattcnnnnnnnccttga 610  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  9336312 agtctctggtataagtatatgtgtcatgtattcattgttgagggatatttggttaggatatatgcgatcatttattcaggaacattctttttttccttga 9336411  T
Q  611 actgcaaagattaataatagatcatatcgaaaatgagagtgagtacaagtaactcgttcatcaacattgttgtccagctggttttggtcttcactcttct 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336412 actgcaaagattaataatagatcatatcgaaaatgagagtgagtacaagtaactcgttcatcaacattgttgtccagctggttttggtcttcactcttct 9336511  T
Q  711 gattaatgttcttgtggctgtatat 735  Q
    |||||||||||||||||||||||||    
T  9336512 gattaatgttcttgtggctgtatat 9336536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 1557230 - 1557161
Alignment:
Q  60 tccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagctt 129  Q
    |||||||||||||||||||||||||||| || || |||||||||||||| |||| ||| |||||||||||    
T  1557230 tccaacattcccacataataaacagatttggggggattaaaaaattaaagtccagccagtccataagctt 1557161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 1556905 - 1556798
Alignment:
Q  383 tgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattc 482  Q
    |||||||||||| |||||||||||||| ||||| ||||| || ||||| |||||||||||  |||||| |||| |||| ||  | ||  |||| ||||||    
T  1556905 tgtttccaattttgaatacattgatttgaccgagaaagctccgtcctcctccaacctccacttccaatgatcctcctcttccacaaaaccaaaaccattc 1556806  T
Q  483 aaatcctc 490  Q
    ||||||||    
T  1556805 aaatcctc 1556798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 1557054 - 1556987
Alignment:
Q  236 tttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccac 303  Q
    ||||| || ||||||||| ||||||| || |||||||| || ||||||||||||| ||||||||||||    
T  1557054 tttctaattgcaaggttggtctttgtaggaattctatcgtggagaagtttccaagaaaaaaccaccac 1556987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 511
Target Start/End: Original strand, 22153748 - 22154235
Alignment:
Q  5 gcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaat 104  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  22153748 gcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaat 22153847  T
Q  105 taaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaac 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||    
T  22153848 taaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaac 22153947  T
Q  205 acactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccact 304  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                     ||||||||| ||||    
T  22153948 acactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattc---------------------taaaaaccatcact 22154026  T
Q  305 ttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaataca 402  Q
    | |||||  ||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  22154027 tccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaa 22154126  T
Q  403 ttgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatg 502  Q
    || ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||| ||    
T  22154127 tttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatcttctaacaaatcgtg 22154226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 511
Target Start/End: Original strand, 22209663 - 22210150
Alignment:
Q  5 gcatgccaaattaatctaccacccctgcgcagctttttattcaaaaactcaccattccaacattcccacataataaacagattaggaggaattaaaaaat 104  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  22209663 gcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaaaaaat 22209762  T
Q  105 taaattccaaccactccataagcttactccagaccttaccaaccccttcgcaatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaac 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||||    
T  22209763 taaattccaaccactccataagcttacaccagaccttaccaaccccttcgcaatgaagaaaaagatgtgttaaatctttaatcgaattgttgcaccaaac 22209862  T
Q  205 acactgtagagagctatccggtgggagcgagtttcttatagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccact 304  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||                     ||||||||| ||||    
T  22209863 acactgaagagagctatccggtgggagcgagttccttatagcaaggttgatctttgttgggattc---------------------taaaaaccatcact 22209941  T
Q  305 ttcgacg--gccgggctcttccaaatatgcgagaaaaccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaataca 402  Q
    | |||||  ||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  22209942 tccgacggtgccgggctcttccaaatatgcgaaaaaaccttcgtcgggagaccatcaagaccatcctcccttatcatcaatgtttccaatttagaataaa 22210041  T
Q  403 ttgattttaccgaaaaagcaccttcctcttccaacctccaaatccaatcatccccctcctcgcccaagacaaacccattcaaatcctcgagcaaatcatg 502  Q
    || ||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||| ||    
T  22210042 tttattttattgacaaagcaccttcctcatccaacctccaaatccaatcatccccctcctcgcccaacacaaacccattcaaatcttctaacaaatcgtg 22210141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 41450828 - 41450779
Alignment:
Q  55 accattccaacattcccacataataaacagattaggaggaattaaaaaat 104  Q
    |||||||||||||| ||| | |||||||| ||| ||||||||||||||||    
T  41450828 accattccaacattgccaaagaataaacaaatttggaggaattaaaaaat 41450779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 443
Target Start/End: Complemental strand, 53562202 - 53561813
Alignment:
Q  56 ccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactccagaccttaccaaccccttcgc 155  Q
    ||||||||||||||||||| |||||| ||||| || ||||||| ||||||||| |||||||| ||||| | ||||| ||| |||      |||||||| |    
T  53562202 ccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacaccaaaccaccttcaccccttcac 53562103  T
Q  156 aatgaagaaaaagatgtgatgaatcttcaatcgaattattgcaccaaacacactgtagagagctatccggtgggagcgagtttcttatagcaaggttgat 255  Q
    |||||||||| | ||| |  | |||||||  ||  ||||| ||||| |||||||    |||  ||||||||||||   | || || ||||| || || ||    
T  53562102 aatgaagaaataaatgagtagcatcttcagccgtgttattacaccacacacactcataagatgtatccggtgggaaacaattcctaatagctagattaat 53562003  T
Q  256 ctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacggc--cgggctcttccaaatatgcgagaaaaccctcctcgggaga 353  Q
    ||| || || ||||||||||| || |||||||| |  || || || || || ||||||  ||| |||||||||||||||   || |||||||||   ||     
T  53562002 cttcgtaggaattctatcatggaggagtttccacgagaagacaacgaccttggacggcgccggactcttccaaatatgcttaaacaccctcctctctagt 53561903  T
Q  354 ccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacctccaa 443  Q
     ||||||| |  || ||||| | |||||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||||| ||||||    
T  53561902 tcatcaaggctctcttccctcaccatcaatgtttccaatttggaatacatagatttaaccgaaaaagtaccgtcctcttccaaactccaa 53561813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 442
Target Start/End: Original strand, 34821645 - 34821847
Alignment:
Q  242 atagcaaggttgatctttgttgggattctatcatgaagaagtttccaagtaaaaaccaccactttcgacg--gccgggctcttccaaatatgcgagaaaa 339  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||||| || |  ||||  ||||||| ||| ||||  || |    
T  34821645 atagcaaggttgatttttgttgggattctatcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaaca 34821744  T
Q  340 ccctcctcgggagaccatcaagaccttcctcccttatcatcaatgtttccaatttagaatacattgattttaccgaaaaagcaccttcctcttccaacct 439  Q
    ||||||||     | | | ||||   ||  ||   | |||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||    
T  34821745 ccctcctctccccatcttgaagattgtcaaccggcaccatcaatgtttccaatctagaatacattgattttaccgaaaaggccccatcctcctccaacct 34821844  T
Q  440 cca 442  Q
    |||    
T  34821845 cca 34821847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 137
Target Start/End: Original strand, 38185505 - 38185584
Alignment:
Q  58 attccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactccaga 137  Q
    |||||||||||||||| | ||||||||||| || ||||||| |||||| ||||||| |||||||||||||| || |||||    
T  38185505 attccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactccataagctcacgccaga 38185584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 34821457 - 34821538
Alignment:
Q  54 caccattccaacattcccacataataaacagattaggaggaattaaaaaattaaattccaaccactccataagcttactcca 135  Q
    ||||||||||||| | |||||| ||||||| ||| ||||| |||| || |||||  || ||||||||||| |||||||||||    
T  34821457 caccattccaacaattccacatgataaacaaattcggagggattataatattaatgtctaaccactccatgagcttactcca 34821538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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