View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21083_low_2 (Length: 508)
Name: NF21083_low_2
Description: NF21083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21083_low_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Original strand, 53620584 - 53621091
Alignment:
| Q |
1 |
aagtgaagctttctatgtaattgatacatatttcataaacataaattattctaagattttttaaatattgagattgagatcaccagtgtactcccttacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53620584 |
aagtgaagctttctatgtaattgatacatatttcataaacataaattattctaagattttttaaatattgagattgagatcaccagtgtactctcttacc |
53620683 |
T |
|
| Q |
101 |
aagtgaggtttctttttatcttccattttaataataggccggaaccaagggtccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620684 |
aagtgaggtttctttttatcttccattttaataataggcaggaaccaagggtccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgct |
53620783 |
T |
|
| Q |
201 |
gcatatgatatactaactaattttgagcagcgctggaagaaagccaccagatggtctgagttgggtcaaaaattgaaaagagtatcttcttggcacgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620784 |
gcatatgatatactaactaattttgagcagcgctggaagaaagccaccagatggtctgagttgggtcaaaaattgaaaagagtatcttcttggcacgatg |
53620883 |
T |
|
| Q |
301 |
attctttgatcaagttagaacgcatctcttggattcttagtccttctgaatcaatgtcaaatgatgatcctgagttatgggtttcaaaggaagatgaccc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620884 |
attctttgatcaagttagaacgcatctcttggattcttagtccttctgaatcaatgtcaaatgatgatcctgagttatgggtttcaaaggaagatgaccc |
53620983 |
T |
|
| Q |
401 |
tcaaaattggcatattcaggttaccagttcactatctttagagtacagtttctatttacannnnnnnngttctttacagataatttgataactttatttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
53620984 |
tcaaaattggcatattcaggttaccagttcactatctttagagtacagtttctatttacattttttttgttctttacagataatttgataactttatttt |
53621083 |
T |
|
| Q |
501 |
tgttttca |
508 |
Q |
| |
|
|||||||| |
|
|
| T |
53621084 |
tgttttca |
53621091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 36841127 - 36841068
Alignment:
| Q |
153 |
ccaaggcaaccatggcatgatctacattgcaaaatcgaagggcctgctgcatatgatata |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
36841127 |
ccaaggcaaccatggcatgacttacattgcaaaattgaaggtccggctgcatatgatata |
36841068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University