View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21083_low_7 (Length: 227)

Name: NF21083_low_7
Description: NF21083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21083_low_7
NF21083_low_7
[»] chr3 (2 HSPs)
chr3 (1-227)||(53620309-53620534)
chr3 (76-119)||(35283250-35283293)
[»] chr2 (2 HSPs)
chr2 (76-121)||(11522055-11522100)
chr2 (76-121)||(15803335-15803380)
[»] chr1 (4 HSPs)
chr1 (76-121)||(49102848-49102893)
chr1 (77-121)||(50084291-50084335)
chr1 (76-121)||(50097777-50097822)
chr1 (77-121)||(5883477-5883521)
[»] chr4 (4 HSPs)
chr4 (80-119)||(3075639-3075678)
chr4 (76-122)||(46669816-46669862)
chr4 (76-121)||(31418829-31418874)
chr4 (77-121)||(6836563-6836607)
[»] chr8 (1 HSPs)
chr8 (21-103)||(13258593-13258676)
[»] chr7 (5 HSPs)
chr7 (76-121)||(4787875-4787920)
chr7 (76-121)||(22556577-22556622)
chr7 (76-121)||(32228931-32228976)
chr7 (76-121)||(40985272-40985317)
chr7 (80-120)||(38679864-38679904)
[»] scaffold0373 (1 HSPs)
scaffold0373 (77-121)||(8979-9023)
[»] chr5 (1 HSPs)
chr5 (81-121)||(35704780-35704820)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 53620309 - 53620534
Alignment:
Q  1 tttagaggatttatatgaattcttaaaattaaaacatactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagat 100  Q
    |||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||    
T  53620309 tttagagggtttatatgaattattaaaattaaaacatactaattgtaagaattaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagat 53620408  T
Q  101 ttctcaaatttttcctatattacccctccctccaaacaaagccttaggaaattattacaagacaaaactgatcaaaacatgagttagataattatacaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53620409 ttctcaaatttttcctatattacccctccctccaaacaaagccttaggaa-ttattacaagacaaaactgatcaaaacatgagttagataattatacaca 53620507  T
Q  201 tgataaggggttagtgagtgtctaact 227  Q
    |||||||||||||||||||||||||||    
T  53620508 tgataaggggttagtgagtgtctaact 53620534  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 35283250 - 35283293
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctata 119  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  35283250 tactctttcaaaaaatgtgaaagatttctcaattttctcctata 35283293  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 11522100 - 11522055
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  11522100 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 11522055  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 15803335 - 15803380
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||    
T  15803335 tactctttcaaaaaatgtgaaagatttctcaattttcccctatatt 15803380  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 49102893 - 49102848
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  49102893 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 49102848  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 50084291 - 50084335
Alignment:
Q  77 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    |||||||||||||||||| || ||||||||| |||||||||||||    
T  50084291 actctttcaaaaaatgtgaaaaatttctcaattttttcctatatt 50084335  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 50097777 - 50097822
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| |||||||||||| |||| | ||||||    
T  50097777 tactctttcaaaaaatgtgaaagatttctcaatttttccttatatt 50097822  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 5883521 - 5883477
Alignment:
Q  77 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||| || || ||||||||| |||||||||||||    
T  5883521 actctttcaaaaaatatgaaaaatttctcaattttttcctatatt 5883477  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 3075678 - 3075639
Alignment:
Q  80 ctttcaaaaaatgtgtaagatttctcaaatttttcctata 119  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  3075678 ctttcaaaaaatgtgaaagatttctgaaatttttcctata 3075639  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 46669862 - 46669816
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatta 122  Q
    |||||||| |||||||||| |||||||||||| |||||||| |||||    
T  46669862 tactctttaaaaaaatgtgaaagatttctcaattttttcctgtatta 46669816  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 31418874 - 31418829
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    |||||||||||||| |||| ||||||| |||| |||||||||||||    
T  31418874 tactctttcaaaaactgtgaaagatttatcaattttttcctatatt 31418829  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 6836563 - 6836607
Alignment:
Q  77 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  6836563 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 6836607  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 13258593 - 13258676
Alignment:
Q  21 tcttaaaattaaaac-atactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttc 103  Q
    ||||||||||||||  ||| |||| | ||| ||||||||||||||||||       ||||||||||||||||||| ||||||||    
T  13258593 tcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagatttc 13258676  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 4787920 - 4787875
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| || ||||||||| |||| ||||||||    
T  4787920 tactctttcaaaaaatgtgaaaaatttctcaatttttccctatatt 4787875  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 22556622 - 22556577
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||||    
T  22556622 tactcttttaaaaaatgtgaaagatttctcaatttttccctatatt 22556577  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 32228931 - 32228976
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| |||||||||||  ||||| |||||||    
T  32228931 tactctttcaaaaaatgtgaaagatttctcattttttttctatatt 32228976  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 40985317 - 40985272
Alignment:
Q  76 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||    
T  40985317 tactctttcaaaaaatgtgaaatatttctctattttttcctatatt 40985272  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 38679904 - 38679864
Alignment:
Q  80 ctttcaaaaaatgtgtaagatttctcaaatttttcctatat 120  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  38679904 ctttcaaaaaatgtgaaagatttatcaaattttccctatat 38679864  T

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Target: scaffold0373 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 8979 - 9023
Alignment:
Q  77 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  8979 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 9023  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 35704780 - 35704820
Alignment:
Q  81 tttcaaaaaatgtgtaagatttctcaaatttttcctatatt 121  Q
    |||||||||||||| |||||||||| | |||||||||||||    
T  35704780 tttcaaaaaatgtgaaagatttctctattttttcctatatt 35704820  T

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