View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21084_high_2 (Length: 304)

Name: NF21084_high_2
Description: NF21084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21084_high_2
NF21084_high_2
[»] chr1 (5 HSPs)
chr1 (8-293)||(18618328-18618613)
chr1 (202-293)||(24035171-24035262)
chr1 (244-293)||(16560738-16560787)
chr1 (201-292)||(47762706-47762797)
chr1 (227-277)||(3550569-3550619)
[»] chr4 (4 HSPs)
chr4 (227-290)||(36186502-36186565)
chr4 (228-289)||(39734596-39734657)
chr4 (244-293)||(1586940-1586988)
chr4 (247-290)||(21327913-21327956)
[»] chr7 (2 HSPs)
chr7 (227-293)||(39825916-39825982)
chr7 (220-277)||(32182046-32182103)
[»] chr5 (2 HSPs)
chr5 (203-290)||(2588360-2588447)
chr5 (199-293)||(12966963-12967057)
[»] chr8 (2 HSPs)
chr8 (219-277)||(13854147-13854205)
chr8 (199-237)||(16636550-16636588)
[»] chr6 (1 HSPs)
chr6 (244-293)||(7763838-7763887)
[»] chr3 (1 HSPs)
chr3 (247-288)||(9197015-9197056)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 18618328 - 18618613
Alignment:
Q  8 tgatgatgcaaagagcaccatctaactatattcaaaataaaaagggaacaaggggaagctaggtcaaaacctttcaaacatttacaaatttgcagcttgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  18618328 tgatgatgcaaagagcaccatctaactatattcaaaataaaaggggaacaaggggaagctaagccaaaacctttcaaacatttacaaatttgtagcttgg 18618427  T
Q  108 taaaccaagcctatttattagtaaatcaacatatttattaggagaattctttagtacctaaaatttgattgggtttcggtatattgcgaaaagggtcata 207  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  18618428 taaaccaagcctatttattagtaaattaacatatttattaggagaattctttagtacctagaatttgattgggtttccgtatattgcgaaaagggtcata 18618527  T
Q  208 ctaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    |||||||||   |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18618528 ctaacttatgctcttaaggcacatattaagaattctattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 18618613  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 24035171 - 24035262
Alignment:
Q  202 gtcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    ||||| ||||||||| | ||||||||||||||||| ||||| |||||||  ||||||||||| ||||||||||||||||||||| |||||||    
T  24035171 gtcatgctaacttatgttcttagggcacatattaagaatttcattaataataaatatttattgtgaaaaattaattcttaactttttgagaa 24035262  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 16560738 - 16560787
Alignment:
Q  244 attaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  16560738 attaatagcaaatatttgttatgaaaaattaattcttaccttcttgagaa 16560787  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 292
Target Start/End: Original strand, 47762706 - 47762797
Alignment:
Q  201 ggtcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgaga 292  Q
    |||||| ||||||| |  |||||| |||||| |||| ||||   ||||||| |||||||||||||||||| |||||| ||||||| ||||||    
T  47762706 ggtcatgctaacttgtgcccttagagcacatgttaagaattcctttaataggaaatatttattatgaaaatttaatttttaacttattgaga 47762797  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 3550569 - 3550619
Alignment:
Q  227 cacatattaaaaattttattaatagcaaatatttattatgaaaaattaatt 277  Q
    ||||| |||| ||||  |||||||||||||||||||||||||||| |||||    
T  3550569 cacattttaagaattccattaatagcaaatatttattatgaaaaactaatt 3550619  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 290
Target Start/End: Original strand, 36186502 - 36186565
Alignment:
Q  227 cacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttga 290  Q
    |||||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  36186502 cacatattaagaattcaattaatagcaaatatttattatgagaaattaattcttaacttcttga 36186565  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 39734596 - 39734657
Alignment:
Q  228 acatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttg 289  Q
    |||| |||| |||||||||||||| ||||||||||||| |||||||||||  ||||||||||    
T  39734596 acatgttaagaattttattaatagtaaatatttattataaaaaattaatttctaacttcttg 39734657  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 1586940 - 1586988
Alignment:
Q  244 attaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||||||||    
T  1586940 attaatatcaaatatttattttgaaaa-ttaattcttaacttcttgagaa 1586988  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 21327913 - 21327956
Alignment:
Q  247 aatagcaaatatttattatgaaaaattaattcttaacttcttga 290  Q
    ||||| ||||||||||||||||||||||||| | ||||||||||    
T  21327913 aatagtaaatatttattatgaaaaattaattttcaacttcttga 21327956  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 39825982 - 39825916
Alignment:
Q  227 cacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    ||||| |||| ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  39825982 cacatgttaagaatttcattaatagcaaatatttattataaaaatttaattcttaacttcttgagaa 39825916  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 32182103 - 32182046
Alignment:
Q  220 cttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaatt 277  Q
    ||||| |||| | |||| |||| ||||||||||||| ||||||| |||||||||||||    
T  32182103 cttagagcacgtgttaagaattctattaatagcaaacatttattctgaaaaattaatt 32182046  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 290
Target Start/End: Original strand, 2588360 - 2588447
Alignment:
Q  203 tcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttga 290  Q
    |||| ||||||||| | |||||| ||||| |||| ||||| |||| | | ||||||||| ||||||||||||||||||||||||||||    
T  2588360 tcatgctaacttatgttcttaggacacatgttaagaatttcattagtggtaaatatttactatgaaaaattaattcttaacttcttga 2588447  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 293
Target Start/End: Complemental strand, 12967057 - 12966963
Alignment:
Q  199 agggtcatactaacttatatccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    |||||||| ||||| | | |||| ||||||||| |||| |||| ||  |||||||||||||||||  ||||||||| || | ||||| |||||||    
T  12967057 agggtcatgctaacatctgtcctaagggcacatgttaagaattctacaaatagcaaatatttattgagaaaaattagttttcaactttttgagaa 12966963  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 13854205 - 13854147
Alignment:
Q  219 ccttagggcacatattaaaaattttattaatagcaaatatttattatgaaaaattaatt 277  Q
    ||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||||||    
T  13854205 ccttaaggcacatgttaagaattctattaatagcaaatatttattatgaaaaattaatt 13854147  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Complemental strand, 16636588 - 16636550
Alignment:
Q  199 agggtcatactaacttatatccttagggcacatattaaa 237  Q
    |||||||||||||||||| || |||||||||||||||||    
T  16636588 agggtcatactaacttatgtctttagggcacatattaaa 16636550  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 7763838 - 7763887
Alignment:
Q  244 attaatagcaaatatttattatgaaaaattaattcttaacttcttgagaa 293  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  7763838 attaataacaaatatttattatgaaaaattaatttttaacttcatgagaa 7763887  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 9197015 - 9197056
Alignment:
Q  247 aatagcaaatatttattatgaaaaattaattcttaacttctt 288  Q
    |||| ||||||||||| |||||||||||||| ||||||||||    
T  9197015 aatatcaaatatttatcatgaaaaattaatttttaacttctt 9197056  T

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