View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21084_low_2 (Length: 365)
Name: NF21084_low_2
Description: NF21084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21084_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 10398963 - 10398761
Alignment:
| Q |
18 |
aagaggattcatggttttttgtggatcactttgaagagggttggaacttgatgtattcattgtatttggatgcatgtaaaagcatgatccctcacatgta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10398963 |
aagaggattcatggttttttgtggatcactttgaggagggttggaacttgatgtattcattgtatttggatgcatgtaaaagcatcatccctcacatgta |
10398864 |
T |
|
| Q |
118 |
catatatagggtactagttttatttattttttgacacaacaaattgggtagatgtttgtttcgttccattaattgcatgtctaccataatgttagtaaca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10398863 |
catatatagggtactagttttatttattttttgacacaacaaattgggtagatgtttgtttcgttccattaattgcatgtctaccataatgctagtaaca |
10398764 |
T |
|
| Q |
218 |
aaa |
220 |
Q |
| |
|
||| |
|
|
| T |
10398763 |
aaa |
10398761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 10397691 - 10397612
Alignment:
| Q |
232 |
taataaattatagggtctattacggaacttctatggtcctctcttgtgtagaggaaaactttatcgatctccttttttct |
311 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10397691 |
taataaattgtagggtctattacggagcttctatggtcctctcttgtgtagagaaaaactttatcgatctccttttttct |
10397612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 10398084 - 10398163
Alignment:
| Q |
232 |
taataaattatagggtctattacggaacttctatggtcctctcttgtgtagaggaaaactttatcgatctccttttttct |
311 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10398084 |
taataaattgtagggtctattacggagcttctatggtcctctcttgtgtagagaaaaactttatcgatctccttttttct |
10398163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 299
Target Start/End: Complemental strand, 10398321 - 10398254
Alignment:
| Q |
232 |
taataaattatagggtctattacggaacttctatggtcctctcttgtgtagaggaaaactttatcgat |
299 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10398321 |
taataaattgtagggtctattacggagcttctatggtcctctcttgtgtagagaaaaactttatcgat |
10398254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University