View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21084_low_5 (Length: 248)
Name: NF21084_low_5
Description: NF21084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21084_low_5 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 38816574 - 38816344
Alignment:
| Q |
18 |
ctacttaggccttatttctggccaatgtgagactttggtttttccgaatacaaatccactacctctttagagtaaatgtttgacttagtatttgtccatg |
117 |
Q |
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| T |
38816574 |
ctacttaggccttatttctggccaatgtgagactttggtttttccgaatacaaatccactacctctttagagtaaatgtttgacttagtatttgtccatg |
38816475 |
T |
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| Q |
118 |
aagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatg |
217 |
Q |
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| T |
38816474 |
aagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatg |
38816375 |
T |
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| Q |
218 |
tttcaatatcatttgatgctcatgttcctac |
248 |
Q |
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| T |
38816374 |
tttcaatatcatttgatgctcatgttcctac |
38816344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 39464324 - 39464184
Alignment:
| Q |
107 |
atttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatgg |
206 |
Q |
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| T |
39464324 |
atttgcccatgaaacagcaaacataaaacaatactgtagagaagaacccactcctaaaagataggggatgtacagacaggtcaacctctcctacaaat-g |
39464226 |
T |
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| Q |
207 |
ggatatccatgtttcaatatcatttgatgctcatgttcctac |
248 |
Q |
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| T |
39464225 |
gaaaatccatgttttaatctcattcaatactcatgttcctac |
39464184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 39457121 - 39456969
Alignment:
| Q |
21 |
cttaggccttatttctggccaatgtgagactttggtttttccgaatacaaatccactacctctttagagtaaatgtttgacttagtatttgtccatgaag |
120 |
Q |
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| T |
39457121 |
cttaggccttatttctatccaatg--agactttgatttttcctgatactaatccactacgtcttg-gagtaaatgatagattttgtattcttccatgaat |
39457025 |
T |
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| Q |
121 |
cggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatg |
176 |
Q |
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| T |
39457024 |
taggaaacataaaatagtactgtagaggagaactcactcccaaaagataggggatg |
39456969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 39406571 - 39406769
Alignment:
| Q |
18 |
ctacttaggccttatttctggccaatgtgagactttggtttttccgaatacaaatccactacctctttagagtaaatgtttgacttagtatttgtccatg |
117 |
Q |
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| T |
39406571 |
ctacttaggccttatttctagccaatgtaagactttgatttttcccaatactaattcactacatctt-agagtaaatgtttgattttgcatttgtccata |
39406669 |
T |
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| Q |
118 |
aagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatggggatatccatg |
217 |
Q |
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| T |
39406670 |
aa------------aaacagtattgtagaggagaacccactcccaaaagatatgggatgtaaaaataggtaaacctctactataaat-aggatatccatg |
39406756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 248
Target Start/End: Original strand, 24177 - 24317
Alignment:
| Q |
107 |
atttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaagacaggtcaacctctgcttcaaatgg |
206 |
Q |
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| T |
24177 |
atttgcccatgaaacagcaaacataaaacaatactgtagagaagaacccactcctaaaagataggggatgtacagacaggtcaacctctcctacaaat-g |
24275 |
T |
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| Q |
207 |
ggatatccatgtttcaatatcatttgatgctcatgttcctac |
248 |
Q |
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| T |
24276 |
gaaaatccatgttttaatctcattcaatactcatgttcctac |
24317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 12097494 - 12097411
Alignment:
| Q |
108 |
tttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaagacaggtcaacc |
192 |
Q |
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| T |
12097494 |
tttgtccatgaaacaaaaaatataaaacagtacggtagaaaagaatccacttccaaaagata-gggatgtaaagacaagtcaacc |
12097411 |
T |
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