View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21085_high_1 (Length: 471)
Name: NF21085_high_1
Description: NF21085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21085_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 52386648 - 52386200
Alignment:
| Q |
17 |
aactactaattcatccggcttttaattattgaacaatagaactgtaggtaaaccatgtaagagaccnnnnnnnnnnn-gacaatgtgtaagggacctaat |
115 |
Q |
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| T |
52386648 |
aactactaattcatccggcttttaattattgaacaatagaactgtaggtaaaccatgtaagggaccttttttttttttgacaatttgtaagggacctaat |
52386549 |
T |
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| Q |
116 |
taaagatgattttggatataagtatattaaatggtagtagaagataagaaattcttatagcaaccattgcatatgcgtccaataacttttgatctttcag |
215 |
Q |
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| T |
52386548 |
taaagatgattttggatataagtatattaaatgttag---aagataagaaattcttatagcaaccattgcatatgcgtccaataacttgtgatctttcag |
52386452 |
T |
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| Q |
216 |
attggtagcgaagttcctgtcatatatatgattataaaagtatgaatgttgttaacttactgtaaatgaataaatggtaaataaaatcaacaatacagag |
315 |
Q |
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| T |
52386451 |
attggtagcgaagttcctttcatat----gattataaaagtatgaatgttgttaacttactgtaaatgaataaatggtaaataaaatcaacaatacagag |
52386356 |
T |
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| Q |
316 |
tatggatgttgtcaacatgaaaaatcaaaatcctggtatgatgtctcaagtgaattataagaatatacagtatttcatgtttataattttgttacagaat |
415 |
Q |
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| T |
52386355 |
tatggatgttgtcaacatgaaaaatcaaaatcctggtatgatgtctcaagtgaattataagaatatacagtatttcatgtttataattttgttacagaat |
52386256 |
T |
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| Q |
416 |
cccgttatcctttctaacatctccgcagctgactttgcagccatgacgacgaggtt |
471 |
Q |
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| T |
52386255 |
cccgttatcctttctaacatctccgcagctgactttgcagccatgacgacgaggtt |
52386200 |
T |
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