View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21085_high_2 (Length: 469)
Name: NF21085_high_2
Description: NF21085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21085_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 452
Target Start/End: Original strand, 10943089 - 10943529
Alignment:
| Q |
10 |
gaagcaaaggaaatacaaacacaacacggcaagcatttgtaagttgtaaagaggagggaatggaaaaggccggcagctagcaggtataaatgtaacattg |
109 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10943089 |
gaagtaaaggaaatacaaacccaacacgacaagcatctgtaagttataaagaggag--aatggaaaaggccggcagctagcgggtgtaaatgtaacattg |
10943186 |
T |
|
| Q |
110 |
gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccc |
209 |
Q |
| |
|
|||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
10943187 |
gcatccttctctatgtcgcttaacaaggtaggctttggaatgtgtattaggtatgatgttggtgaatttgtgttggccaaaacggattagtttgctcccc |
10943286 |
T |
|
| Q |
210 |
tgtgtgatgttgatgtggcggaggtcgtagctttacacacagctctgcaatggatgttagaccttcaattcaacaatgtggacttcaccctttattctaa |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10943287 |
tgtgtgatgttgatgtggtggaggtcgtagctttacacacagctctgcaatgggtgttagaccttcaattcaacaatgtggacttcgccctttattctaa |
10943386 |
T |
|
| Q |
310 |
atgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgctgtttcttgcagnnnnnnnnaatgcctctaatctag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
10943387 |
atgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgctgtttcttgcagttttttttaatgccactaatctag |
10943486 |
T |
|
| Q |
410 |
tatgtgttttctgcgattgcgtcttggttgcatgggtgaatgc |
452 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10943487 |
tatgtgttttctgcgattgcgtattggttgcatgggtgaatgc |
10943529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 452
Target Start/End: Original strand, 10948958 - 10949398
Alignment:
| Q |
10 |
gaagcaaaggaaatacaaacacaacacggcaagcatttgtaagttgtaaagaggagggaatggaaaaggccggcagctagcaggtataaatgtaacattg |
109 |
Q |
| |
|
|||| ||||||||||||||| ||||||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10948958 |
gaagtaaaggaaatacaaacccaacacgacaagcatctgtaagttataaagaggag--aatggaaaaggccggcagctagcgggtgtaaatgtaacattg |
10949055 |
T |
|
| Q |
110 |
gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccc |
209 |
Q |
| |
|
|||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
10949056 |
gcatccttctctatgtcgcttaacaaggtaggctttggaatgtgtattaggtatgatgttggtgaatttgtgttggccaaaacggattagtttgctcccc |
10949155 |
T |
|
| Q |
210 |
tgtgtgatgttgatgtggcggaggtcgtagctttacacacagctctgcaatggatgttagaccttcaattcaacaatgtggacttcaccctttattctaa |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10949156 |
tgtgtgatgttgatgtggtggaggtcgtagctttacacacagctctgcaatgggtgttagaccttcaattcaacaatgtggacttcgccctttattctaa |
10949255 |
T |
|
| Q |
310 |
atgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgctgtttcttgcagnnnnnnnnaatgcctctaatctag |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
10949256 |
atgagttgttgatcatgttatatctagcaatttatttgatgttgttgaatgcattttttgatgctgtttcttgcagttttttttaatgccactaatctag |
10949355 |
T |
|
| Q |
410 |
tatgtgttttctgcgattgcgtcttggttgcatgggtgaatgc |
452 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10949356 |
tatgtgttttctgcgattgcgtattggttgcatgggtgaatgc |
10949398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 147 - 294
Target Start/End: Original strand, 6860201 - 6860348
Alignment:
| Q |
147 |
gaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttaca |
246 |
Q |
| |
|
||||||| ||||| |||||| ||||||| || || ||||||||| |||| |||||||||||| |||||||||||||| | ||| | ||| | |||||| |
|
|
| T |
6860201 |
gaatgtgcattagtaatgatgctggtgaatttaggcgggccaaaacagattagtttgctcccctatgtgatgttgatgtaggggaagccgttggtttaca |
6860300 |
T |
|
| Q |
247 |
cacagctctgcaatggatgttagaccttcaattcaacaatgtggactt |
294 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||| |||| ||||||| |
|
|
| T |
6860301 |
cacagctctgtaatgggtcttagaccttcaattcgacaacatggactt |
6860348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 327 - 444
Target Start/End: Original strand, 10919535 - 10919649
Alignment:
| Q |
327 |
ttatatctagcaatttatttgatgttgttgaatgcattttttgatgctgtttcttgcagnnnnnnnnaatgcctctaatctagtatgtgttttctgcgat |
426 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
10919535 |
ttatatctggtaatttatttgatgttattgaatgcatttttt-atgctgtttcttgcagttttttt--atgcctctaatctagtatgtcttttgtgcgat |
10919631 |
T |
|
| Q |
427 |
tgcgtcttggttgcatgg |
444 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
10919632 |
tgcgttttggttgcatgg |
10919649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 12555734 - 12555636
Alignment:
| Q |
136 |
ggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggt |
234 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||| | || || || ||||||| |||||||||||| || |||||||| ||||||| |||||| |
|
|
| T |
12555734 |
ggtaggcttggggatgtgtattagaaatgatgttggtgagttcgttcttgctaaaacggcttggtttgctcctctttgtgatgtcgatgtggaggaggt |
12555636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 136 - 329
Target Start/End: Complemental strand, 31957367 - 31957171
Alignment:
| Q |
136 |
ggtaggctttggaatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgat--gttgatgt-ggcggag |
232 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||||| || || |||||||||| |||||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
31957367 |
ggtaggcttgggaatgtgtattaggaatgatgctggtgaatttatgttggccaaaacagattggtttgctcccctgtgtgatgcgttgatgtggggggag |
31957268 |
T |
|
| Q |
233 |
gtcgtagctttacacacagctctgcaatggatgttagaccttcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgtta |
329 |
Q |
| |
|
||| ||| |||| |||||||||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||||| |||||||||||| |||| |
|
|
| T |
31957267 |
gtcataggtttatacacagctctacaatgggtgttagaccttcaattcgacaatgtggactttgtccttgattctaaaacagttgttgatcacgtta |
31957171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 68 - 322
Target Start/End: Complemental strand, 24329678 - 24329422
Alignment:
| Q |
68 |
aatggaaaaggccggcagctagcaggtataaatgtaacattg--gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatga |
165 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||| || || || ||| || | | ||| || |||| |||||||| |||||| |||| |
|
|
| T |
24329678 |
aatgaaaaaagccggcagctggcaggtataaatgtaacattgatgcgtctttttcttcgtcgctaaacatggattgcttgggaatgtgcattaggaatga |
24329579 |
T |
|
| Q |
166 |
tgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttacacacagctctgcaatggatg |
265 |
Q |
| |
|
||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| | ||| | | |||||||||| ||||||||| || |
|
|
| T |
24329578 |
tgtcagggaatttgtgctggccaaaacggattggtttgctccactgtgtgatgttgatctgggggaagccgttggtctacacacagcgctgcaatgggtg |
24329479 |
T |
|
| Q |
266 |
ttagaccttcaattcaacaatgtggacttcaccctttattctaaatgagttgttgat |
322 |
Q |
| |
|
| | ||||||||||| ||||||| ||||| | || |||||||| ||||||||||| |
|
|
| T |
24329478 |
tcaaaccttcaattcgacaatgttgactttgcactggattctaaaagagttgttgat |
24329422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 69 - 329
Target Start/End: Complemental strand, 1479671 - 1479409
Alignment:
| Q |
69 |
atggaaaaggccggcagctagcaggtataaatgtaacattg--gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgat |
166 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| |||| ||||| || ||| ||| || ||| ||||| || ||||| || |||||| ||||| |
|
|
| T |
1479671 |
atggaaaaaaccggcagcgggcaggtataaatgtaatattgctgcatcattttcttcattgcttaacattgtaggattgggaatatgcattaggaatgat |
1479572 |
T |
|
| Q |
167 |
gttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttacacacagctctgcaatggatgt |
266 |
Q |
| |
|
| ||||||| |||||| | ||||||||||||||||||||||| | || ||||||||| | ||| ||| | |||||||||| ||||||||||||| | |
|
|
| T |
1479571 |
gctggtgaatttgtgcggtccaaaacggattggtttgctcccttatgcgatgttgatctaagggaaaccgttggtttacacacaactctgcaatggatct |
1479472 |
T |
|
| Q |
267 |
tagaccttcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgtta |
329 |
Q |
| |
|
||||||||||||| |||| ||||||||| | || |||||||| |||||||||||||||||| |
|
|
| T |
1479471 |
cagaccttcaattcgacaacgtggacttcgctctagattctaaaagagttgttgatcatgtta |
1479409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 148 - 329
Target Start/End: Original strand, 6969361 - 6969542
Alignment:
| Q |
148 |
aatgtgtattaggtatgatgttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttacac |
247 |
Q |
| |
|
|||||| || ||| |||||| | ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||| | | | | | | | ||||||| |
|
|
| T |
6969361 |
aatgtgcatcaggaatgatgctagtgaatttgtgcgggctaaaacggattggtttgctcccctgtgtgatgttgatgtagggaaagccattggtttacac |
6969460 |
T |
|
| Q |
248 |
acagctctgcaatggatgttagaccttcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgtta |
329 |
Q |
| |
|
||| ||||||||||| | | |||||||||||| |||| || ||||| | || |||||||| ||||||||||||||||| |
|
|
| T |
6969461 |
acaactctgcaatgggtctcggaccttcaattcgacaacgtagactttgctctggattctaaaaaagttgttgatcatgtta |
6969542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 1310952 - 1311037
Alignment:
| Q |
244 |
acacacagctctgcaatggatgttagaccttcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgtta |
329 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| ||||| ||||| ||| || || |||||||| |||||||||||||||||| |
|
|
| T |
1310952 |
acacacagctctccaatgagtgttagaccttcaatttaacaacgtggatttcgcctttgattctaaacgagttgttgatcatgtta |
1311037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 49407435 - 49407345
Alignment:
| Q |
132 |
acagggtaggctttggaatgtgtattaggtatgatgttggtgaactt-gtgctggccaaaacggattggtttgctcccctgtgtgatgttg |
221 |
Q |
| |
|
||||||||||||| |||||||| |||| |||||| ||||||| || ||| ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
49407435 |
acagggtaggcttgggaatgtgcattataaatgatgctggtgaaattcgtgttggccaaaacggattggcttgctcccatgtgtgatgttg |
49407345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 49407324 - 49407252
Alignment:
| Q |
257 |
caatggatgttagaccttcaattcaacaatgtggacttcaccctttattctaaatgagttgttgatcatgtta |
329 |
Q |
| |
|
|||||| ||| |||| ||||||||||||||||||||||| | || |||||||| |||||||| ||||||||| |
|
|
| T |
49407324 |
caatgggtgtcagactttcaattcaacaatgtggacttcgcactggattctaaaagagttgttaatcatgtta |
49407252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 261
Target Start/End: Original strand, 33314842 - 33315034
Alignment:
| Q |
69 |
atggaaaaggccggcagctagcaggtataaatgtaacattg--gcatccttctctatgttgattgacagggtaggctttggaatgtgtattaggtatgat |
166 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||||||||||| | ||| || ||| || | || ||||||||| || |||||||| |||||| ||||| |
|
|
| T |
33314842 |
atggaaaaagccggcaacgggcaggtataaatgtaacattgatggatcattttcttcgtcgtttatcagggtaggattgggaatgtggattaggaatgat |
33314941 |
T |
|
| Q |
167 |
gttggtgaacttgtgctggccaaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgtagctttacacacagctctgcaatg |
261 |
Q |
| |
|
| ||||||| |||||| |||||||| ||||||||||||||| | ||| |||||||||| | ||| ||||| | ||| |||||||||||||||| |
|
|
| T |
33314942 |
gctggtgaatttgtgcgggccaaaatagattggtttgctcccttctgtaatgttgatgtcggggaagtcgttggttt--acacagctctgcaatg |
33315034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 39839859 - 39839908
Alignment:
| Q |
188 |
aaaacggattggtttgctcccctgtgtgatgttgatgtggcggaggtcgt |
237 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
39839859 |
aaaacggatttgtttgctcctctgtgtgatgttgatgtgggggaggtcgt |
39839908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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