View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21085_high_7 (Length: 258)
Name: NF21085_high_7
Description: NF21085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21085_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 52092450 - 52092208
Alignment:
| Q |
1 |
tatttttctttttcatgacatatattaaagaattgtagtttggttgatgatgannnnnnnctaacatttacaaggccaactccaagaacaatatcacact |
100 |
Q |
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| T |
52092450 |
tatttttccttttcatgacatatattaaagaattgtagtttggttgatgatgatttttttctaacatttacaaggccaactccaagaacaatatcacact |
52092351 |
T |
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| Q |
101 |
ttctggttttggtgattattattgattgattagaagtaaaggaaacccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcaa |
200 |
Q |
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| T |
52092350 |
ttctggttttggtgattattattgattgattagaagtaaaggaaacccattaagtatcttgtttgtggagatagaattcatgtgataaaaatagttgcag |
52092251 |
T |
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| Q |
201 |
gttgtgtgtgtatctttgtttatactttgtctatgtgctgttat |
244 |
Q |
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| T |
52092250 |
gttgtgtgtgtatctttgtttatac-ttgtctatgtgctgttat |
52092208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 209
Target Start/End: Complemental strand, 52082253 - 52082020
Alignment:
| Q |
3 |
tttttctttttcatgacatatattaaagaat----tgtagtttggttgatgatgannnnnnn-ctaacatttacaaggccaactccaagaacaatatcac |
97 |
Q |
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| T |
52082253 |
tttttctttttcatgacatatattaaagaaagaaatgtagtttggttgatgattattttattgctaacatttacaaggtaatctccaagaacaatatcgc |
52082154 |
T |
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| Q |
98 |
actttctggttttggtgattattattgattgattagaagtaaaggaaac----------------------ccattaagtatcttgtttgtggagataga |
175 |
Q |
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| T |
52082153 |
acattctgggtatggtgattattattgattgattagaagtaaaggaaactcatcatgacatatatctttgaccattaagtatcttgtttgtggagatagc |
52082054 |
T |
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| Q |
176 |
attcatgtgataaaaatagttgcaagttgtgtgt |
209 |
Q |
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| T |
52082053 |
attcatgtgataaaaatagttccaagctgtgtgt |
52082020 |
T |
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