View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21085_low_1 (Length: 540)
Name: NF21085_low_1
Description: NF21085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21085_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 3283048 - 3282522
Alignment:
| Q |
18 |
ctcctctaagtgttcaaatcggaggagcaac-ttaggtcgaattttcaacgttttcaatgagtctattgataatttaggtcttgtaaattgtacatatat |
116 |
Q |
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||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3283048 |
ctcctctaagtgttcaaattggagtagcaaccttaggtcgaattttcaacgttttcaatgagtctattgataatttaggtcttgtaaattgtacatatat |
3282949 |
T |
|
| Q |
117 |
actcgactcaacatcttagctagnnnnnnnnnnnn----agctttgaattttcaacattctcatagagtctattgataatttagatcttgtatgttgcag |
212 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282948 |
actcgactcaacatcttagctagttttttttttttttttagcttcgaattttcaacattctcatagagtctattgataatttagatcttgtatgttgcag |
3282849 |
T |
|
| Q |
213 |
atactcagcacaacatctagtcagtgatagagtgtcatcactttgaggtggtggaagaagtaatcaatttgaacttgattatcgctagaccaaatctgaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282848 |
atactcagcacaacatctagtcagtgatagagtgtcatcactttgaggtggtggaagaagtaatcaatttgaacttgattatcgctagaccaaatctgaa |
3282749 |
T |
|
| Q |
313 |
tattttgattttgatgatgagatccaatgcgaattcttcaatatgaaaagaaatttaacaatcgatccctctccataaacctccnnnnnnnagaaggnnn |
412 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3282748 |
tattttgattttgatgatgagatccaatgcaaatttttcaatatgaaaagaaatttaacaatcgatccctctccataaacctcctttttttagaaggaaa |
3282649 |
T |
|
| Q |
413 |
nnnnncttggttcagtggttttataatttgaaatttttaaatgtaaaatctaacttcagttttgagtattgaattttaggtttgagatttaattgtatat |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282648 |
aaaaacttggttcagtggttttataatttgaaatttttaaatgtaaaatctaacttcagttttgagtattgaattttaggtttgagatttaattgtatat |
3282549 |
T |
|
| Q |
513 |
ttgagttaggtcactctattttcttgg |
539 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
3282548 |
ttgagttaggtcactctatttttttgg |
3282522 |
T |
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