View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21085_low_11 (Length: 218)
Name: NF21085_low_11
Description: NF21085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21085_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 39247792 - 39247997
Alignment:
| Q |
1 |
gagaattaaggagagaaaaattgagtggtaacttcaccaaattaaaacaccattccaaacatacataaaaagtttgagtatggcaataagggacgcaaga |
100 |
Q |
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| T |
39247792 |
gagaattaagaagaaaaaaattgaggggtaacttcaccaaattaaa-caccattccaaacatacataaaaagtttgagtatggcaataagggacgcaaga |
39247890 |
T |
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| Q |
101 |
ggttgttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctttaaggtccactgtcccatcttcagt |
200 |
Q |
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| T |
39247891 |
ggttgttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagt |
39247990 |
T |
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| Q |
201 |
ataatct |
207 |
Q |
| |
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||||||| |
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| T |
39247991 |
ataatct |
39247997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 39300205 - 39300306
Alignment:
| Q |
106 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctttaaggtccactgtcccatcttcagtataat |
205 |
Q |
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| T |
39300205 |
ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat |
39300304 |
T |
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| Q |
206 |
ct |
207 |
Q |
| |
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|| |
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| T |
39300305 |
ct |
39300306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 39196652 - 39196746
Alignment:
| Q |
113 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
207 |
Q |
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| T |
39196652 |
tacctactatgaaggagcaagctttccatcgtccagtttttgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39196746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 39218224 - 39218318
Alignment:
| Q |
113 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
207 |
Q |
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|||||||||||||||| |||||| |||||| ||| || || ||||| ||||| ||||||||||| ||||| ||||| ||||||| ||| |||||| |
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| T |
39218224 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39218318 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 39225322 - 39225416
Alignment:
| Q |
113 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
207 |
Q |
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| T |
39225322 |
tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatct |
39225416 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 39179407 - 39179501
Alignment:
| Q |
113 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctttaaggtccactgtcccatcttcagtataatct |
207 |
Q |
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|||||||||| ||||| |||||| |||||||||| || |||||||| |||| ||||||||||| ||||| ||||| ||||| | ||| |||||| |
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| T |
39179407 |
tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcctgagtgtaatct |
39179501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 39240973 - 39241035
Alignment:
| Q |
113 |
tacctactatgaaggaacaagctctccatcttcctgtatttgatctcaaaactggtctacctt |
175 |
Q |
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||||||| | ||||||||||||| ||||| |||| || |||||||| ||||||||||| |||| |
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| T |
39240973 |
tacctacaaggaaggaacaagctttccatgttccagtctttgatcttaaaactggtctgcctt |
39241035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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