View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21085_low_2 (Length: 519)

Name: NF21085_low_2
Description: NF21085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21085_low_2
NF21085_low_2
[»] chr1 (3 HSPs)
chr1 (168-501)||(52092542-52092874)
chr1 (168-501)||(52082346-52082678)
chr1 (145-263)||(19468478-19468596)
[»] chr3 (9 HSPs)
chr3 (7-264)||(51120734-51120991)
chr3 (165-264)||(51113780-51113879)
chr3 (100-264)||(13470666-13470830)
chr3 (100-260)||(51764374-51764534)
chr3 (172-319)||(33714861-33715008)
chr3 (186-319)||(33708994-33709127)
chr3 (193-250)||(37580847-37580904)
chr3 (297-369)||(514859-514931)
chr3 (170-210)||(1657306-1657346)
[»] chr5 (5 HSPs)
chr5 (100-260)||(41889488-41889648)
chr5 (101-264)||(32267476-32267636)
chr5 (173-263)||(41901542-41901632)
chr5 (191-264)||(20478107-20478180)
chr5 (173-253)||(37937899-37937979)
[»] chr8 (7 HSPs)
chr8 (168-264)||(27922509-27922605)
chr8 (167-258)||(17636402-17636493)
chr8 (165-258)||(18315272-18315365)
chr8 (99-264)||(34936096-34936261)
chr8 (86-210)||(28246215-28246339)
chr8 (165-264)||(32151302-32151401)
chr8 (148-210)||(21235613-21235675)
[»] chr6 (21 HSPs)
chr6 (100-264)||(6402861-6403025)
chr6 (86-259)||(6585157-6585330)
chr6 (100-264)||(6432162-6432326)
chr6 (100-264)||(6594540-6594704)
chr6 (145-264)||(6394865-6394984)
chr6 (145-266)||(6426510-6426631)
chr6 (144-264)||(14820694-14820814)
chr6 (163-261)||(6410010-6410108)
chr6 (172-263)||(14802338-14802429)
chr6 (168-266)||(6423216-6423314)
chr6 (153-210)||(12102321-12102378)
chr6 (163-264)||(14818383-14818484)
chr6 (100-260)||(7119162-7119322)
chr6 (100-260)||(7131640-7131800)
chr6 (163-258)||(6415973-6416068)
chr6 (165-251)||(6589322-6589408)
chr6 (191-261)||(10579761-10579831)
chr6 (86-264)||(11936195-11936373)
chr6 (86-264)||(11948175-11948353)
chr6 (86-259)||(7994102-7994275)
chr6 (191-264)||(6596953-6597026)
[»] chr4 (26 HSPs)
chr4 (99-264)||(553480-553645)
chr4 (165-264)||(1548423-1548522)
chr4 (165-264)||(546914-547013)
chr4 (163-264)||(1524483-1524584)
chr4 (187-355)||(1754429-1754589)
chr4 (166-264)||(8187091-8187189)
chr4 (168-261)||(7307864-7307957)
chr4 (100-264)||(3438500-3438663)
chr4 (147-258)||(532196-532307)
chr4 (148-210)||(570406-570468)
chr4 (166-264)||(1513407-1513505)
chr4 (162-264)||(1537763-1537865)
chr4 (100-210)||(1600474-1600584)
chr4 (100-210)||(53761706-53761816)
chr4 (167-264)||(8184031-8184128)
chr4 (107-264)||(55908669-55908826)
chr4 (165-264)||(1552766-1552865)
chr4 (100-227)||(7225817-7225944)
chr4 (167-234)||(12121458-12121525)
chr4 (100-253)||(640927-641080)
chr4 (167-251)||(1519143-1519227)
chr4 (241-357)||(6006235-6006351)
chr4 (195-264)||(558499-558568)
chr4 (166-210)||(1489361-1489405)
chr4 (196-264)||(1508033-1508101)
chr4 (301-357)||(1528338-1528394)
[»] chr2 (4 HSPs)
chr2 (99-264)||(45245018-45245183)
chr2 (167-250)||(32785773-32785856)
chr2 (200-258)||(44575529-44575587)
chr2 (100-264)||(1037598-1037762)
[»] chr7 (3 HSPs)
chr7 (100-264)||(15092085-15092249)
chr7 (86-234)||(7977609-7977757)
chr7 (100-253)||(10614605-10614758)
[»] scaffold0295 (1 HSPs)
scaffold0295 (145-264)||(603-722)
[»] scaffold0041 (1 HSPs)
scaffold0041 (193-264)||(39185-39256)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 168 - 501
Target Start/End: Complemental strand, 52092874 - 52092542
Alignment:
Q  168 aatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggata 267  Q
    |||||||||| |||||  |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||    
T  52092874 aatgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggcta 52092775  T
Q  268 ctacatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggtt 367  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52092774 ctacaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagta-aaaactgcacacgattgagagagataaatatacgaggtt 52092676  T
Q  368 gtcgtgaggtgtgtgttgatgttaatttctggacgatgatggtattttcaaggtcatcattgaga----aagattatggctccctctcannnnnnnncct 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||          |    
T  52092675 gtcgtgaggtgtgtgttgatgttaatttctggacgatgatggtattttcaaggtcatcattgagaaattaagattatggctccctctcatttttg----t 52092580  T
Q  464 agtgacgacaagtggaaacctttattgaaccatggatg 501  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52092579 agtgacgacaagtggaaacctttattgaaccatggatg 52092542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 168 - 501
Target Start/End: Complemental strand, 52082678 - 52082346
Alignment:
Q  168 aatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggata 267  Q
    |||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggata 52082579  T
Q  268 ctacatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggtt 367  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||| |  | | ||    
T  52082578 ctacaattggacttggaacggtgtgatcatatcacagagaaaggagtcgggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggatt 52082479  T
Q  368 gtcgtgaggtgtgtgttgatgttaatttctggacgatgatggtattttcaaggtcatcattgagaaagattatggctccctctcannnnnnnncctagtg 467  Q
    ||| | | ||||||| ||||||||||||||||| | |||||||| ||| |||||||||||||||||| |||||||||||||||||        |||||||    
T  52082478 gtcataatgtgtgtgctgatgttaatttctggatggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctca-tttttgtcctagtg 52082380  T
Q  468 acgacaagtggaaacctttattgaaccatggatg 501  Q
    ||||||||||||||||||||||||||| ||||||    
T  52082379 acgacaagtggaaacctttattgaaccttggatg 52082346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 19468478 - 19468596
Alignment:
Q  145 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtga 244  Q
    |||||||||||||| |  | |||| ||||||||| ||||| |||  ||||||||||||| |||||| | |||||  |||||||||||||| | |||||||    
T  19468478 tgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtga 19468577  T
Q  245 tctcaaagagttgttgtgg 263  Q
    |||||||||  ||||||||    
T  19468578 tctcaaagaactgttgtgg 19468596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 51120734 - 51120991
Alignment:
Q  7 aatgacttttacctcatcgccgattgttttcccgatttgcagtcgcttggttttaagtaccgccatggaatatgtaacaaaggtattggttgtgttttat 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51120734 aatgactttttcctcatcgccgattgttttcccgatttgcagtcgcttggttttaagtactgccatggaatatgtaacaaaggtattggttgtgttttat 51120833  T
Q  107 ggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaactt 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51120834 ggagatgttgtaacattagacacttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaactt 51120933  T
Q  207 gtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||  | |||| | |||||||||||| | | ||||| ||||||||||||||| |||||    
T  51120934 gtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 51120991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 51113780 - 51113879
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||||| || |||| ||||||||||  |||||||||| ||||   |||||||||||||| | ||||||||||| |||||||||||||||    
T  51113780 tggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 13470666 - 13470830
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||| ||||||||| ||||| || ||||||||  ||  ||||  || |||||| |  | ||||||||||||||  |||| |||  |||||||||    
T  13470666 gttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcccaatctggaggtgt 13470765  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||| |||||  || ||||| ||||| | ||| |||||||||||| ||||||||||    
T  13470766 tgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtggg 13470830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 51764374 - 51764534
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||| ||| ||||| || |||||| |  |||  |||||||||||||| |  | |||||||||||||| |||||  ||  |||||||||    
T  51764374 gttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgt 51764473  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 260  Q
    |  ||||||||   |||||| |||||||| ||||| | |||| ||||||||||| ||||||    
T  51764474 tagacttgtcatttacaaaagttgatgataaaacactctatgcgatctcaaagaattgttg 51764534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 33714861 - 33715008
Alignment:
Q  172 aactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactac 271  Q
    ||||||||||||  |||| |||||||| |||||||||||||  ||| |||||||||||   ||||||||| ||| |||||||||||   | || | ||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttgccctcggcttctac 33714960  T
Q  272 atttggacttggaacggtgtgatcatatcacagagaaaggagtgaggc 319  Q
    || ||||| |||||   ||| ||||| |||| ||||| ||||||||||    
T  33714961 atctggacctggaagattgtcatcatgtcacggagaagggagtgaggc 33715008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 186 - 319
Target Start/End: Original strand, 33708994 - 33709127
Alignment:
Q  186 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaa 285  Q
    |||| |||||||| ||||||||||| |  ||| |||||||||||   |||||||||  ||||||||||||||   | || | |||||| ||||| |||||    
T  33708994 caaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccctcggcttctacatctggacctggaa 33709093  T
Q  286 cggtgtgatcatatcacagagaaaggagtgaggc 319  Q
     | ||| ||||| |||| ||||| ||||||||||    
T  33709094 ggatgtcatcatgtcacggagaagggagtgaggc 33709127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 37580847 - 37580904
Alignment:
Q  193 gaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 250  Q
    ||||| ||||||||||||||  ||| |||||||||| ||  |||||||||||||||||    
T  37580847 gaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaa 37580904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 514859 - 514931
Alignment:
Q  297 tatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaatatacgaggttgt 369  Q
    |||||||||||  ||||||| ||| || ||  |||||||||||||| |||||||||| ||| || ||||||||    
T  514859 tatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgt 514931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 1657346 - 1657306
Alignment:
Q  170 tgaactttgaagttctcaaattggaggtgttgaacttgtca 210  Q
    ||||||||||||||| |||| ||||||||||| ||||||||    
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtca 1657306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 100 - 260
Target Start/End: Original strand, 41889488 - 41889648
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||| |||||||||||||||| | ||||||||  |||| ||||||| |||||| |  | || |||||||||| |||||| ||||||||||||||    
T  41889488 gttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgt 41889587  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 260  Q
    ||||||| ||| | |||||| |||||||||||||| | |||  ||||||||||||||||||    
T  41889588 tgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttg 41889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 32267636 - 32267476
Alignment:
Q  101 ttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgtt 200  Q
    ||||| ||| |||||||||||||||||| ||||||||  ||   ||||||| ||||||||   |   ||||||||||||||||| |||||||||||| ||    
T  32267636 ttttaaggatatgttgtaacattagacatttgaacttatcccagtgttcaacagtgaaactaga---aatgaactttgaagttcccaaattggaggtatt 32267540  T
Q  201 gaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||||||||| | |||| | ||||||||||| || | ||| |||||||||||||||||||||||    
T  32267539 gaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtggg 32267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 41901542 - 41901632
Alignment:
Q  173 actttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 263  Q
    |||||||||||| |||| |||||||||||||||||||| | |||||| ||||||||||| || | ||| ||||||||||||||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 20478107 - 20478180
Alignment:
Q  191 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||| | ||||||||||| || ||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtggg 20478180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 37937979 - 37937899
Alignment:
Q  173 actttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 253  Q
    |||||||||||| |||  | ||||||||| ||||| || | |||| |||||||||| ||||| | ||||| ||||||||||    
T  37937979 actttgaagttcccaaccttgaggtgttggacttgacacatacaagaattgatgatcaaacactctatgtaatctcaaaga 37937899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 27922605 - 27922509
Alignment:
Q  168 aatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||||| ||||||||||||||||||||||||| | |||||  ||||||||||| || | ||| |||||||||||||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtggg 27922509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 17636402 - 17636493
Alignment:
Q  167 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 258  Q
    |||||||||||||||||| ||||||||||||||||||||||||| | |||  | |||| |||||| ||||||||||||||||||||||||||    
T  17636402 gaatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 165 - 258
Target Start/End: Original strand, 18315272 - 18315365
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 258  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||| | |||||| ||||||||||| || | |||||||||||||||||||||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgt 18315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 34936096 - 34936261
Alignment:
Q  99 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 198  Q
    ||||||| ||||||||||| |||||||||| ||| ||||| ||| |||||||| |||||| |  ||  |||||| |||||| ||||  ||| | ||||||    
T  34936096 tgttttaaggagatgttgtgacattagacatttgtacttggccgattgttcaaaagtgaaccttcacagaatgatctttgatgttccaaaactagaggtg 34936195  T
Q  199 ttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||| |||||||| | |||| | |||||||| ||||| | ||||  ||| ||||||||||| |||||    
T  34936196 ttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtggg 34936261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 28246215 - 28246339
Alignment:
Q  86 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 185  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  ||||||||||| |||| |  |||  | |||||||||||||||     
T  28246215 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgttgttcaagactgaagctacatacattgaactttgaagttcc 28246314  T
Q  186 caaattggaggtgttgaacttgtca 210  Q
    |||| ||||||||||| ||||||||    
T  28246315 caaactggaggtgttggacttgtca 28246339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 32151401 - 32151302
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||||||||||| ||||||  |||  |||||||||| |||||||||   ||||   |||||||||||||| | ||||||||||||||||||||| |||||    
T  32151401 tggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 21235675 - 21235613
Alignment:
Q  148 tcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtca 210  Q
    |||| |||||||| |  |||| ||||||||||||||| |||| ||||||||||||||||||||    
T  21235675 tcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtca 21235613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 6403025 - 6402861
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||||||||||||| || |||||||| || || |||||||||||||| |  | |||||| ||||||| ||||| | || | || ||||    
T  6403025 gttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgt 6402926  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||| | || ||  |||||||||||||| | |||||||||||||||| |||| |||||    
T  6402925 tgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtggg 6402861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 6585157 - 6585330
Alignment:
Q  86 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 185  Q
    |||||||| ||  ||||||| ||||||||| ||| ||||| || |||||||| || || |||||||||||||| |  | |||||| ||||||  ||||      
T  6585157 aaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttac 6585256  T
Q  186 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgtt 259  Q
    | | |||||||| |||||||||||| | |||||  |||||||||||||| | ||||||||||||||||||||||    
T  6585257 ccagttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgtt 6585330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 264
Target Start/End: Complemental strand, 6432326 - 6432162
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| |||||||||||||  ||| ||| ||||||||  ||  ||||  || |||||| |  |||||||||||||||||||||| |||  || ||||||    
T  6432326 gttttaaggagatgttgtaaacttaaacatttgaacttagcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgt 6432227  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||| ||||   |||||||||||||| | |||||||||| ||||| ||||||||||    
T  6432226 tgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtggg 6432162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 6594540 - 6594704
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||| ||| |||| ||| ||| ||||  |||| |||||||||||||| |  |||||||| ||||||  ||||| |||| |||||||||    
T  6594540 gttttaaggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgt 6594639  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    || |||||||||| ||| |  |||||||||| ||| |   |||||||||||||| ||||||||||    
T  6594640 tgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtggg 6594704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 6394984 - 6394865
Alignment:
Q  145 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtga 244  Q
    ||||||| ||||||||  |||||||||||||||| ||||| | |  |||||||||||||||||||||| ||||   |||||||||||||  | | |||||    
T  6394984 tgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtga 6394885  T
Q  245 tctcaaagagttgttgtggg 264  Q
    ||||||||| ||||||||||    
T  6394884 tctcaaagaattgttgtggg 6394865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 266
Target Start/End: Complemental strand, 6426631 - 6426510
Alignment:
Q  145 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtga 244  Q
    |||||||  |||||||  |||||||||||||||| ||||| | |  ||||||||||||| |||||||| ||||  |||||||||||||| || |||| ||    
T  6426631 tgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcga 6426532  T
Q  245 tctcaaagagttgttgtgggat 266  Q
    ||||||||| ||||||| ||||    
T  6426531 tctcaaagaattgttgtcggat 6426510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 14820814 - 14820694
Alignment:
Q  144 ttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtg 243  Q
    ||||||| |||||||||  |||||||| ||||||| ||||| ||| || |||||||||||||| ||||| |||||  ||||| |||||||| | ||| ||    
T  14820814 ttgttcaggagtgaaactacatggaattaactttgcagttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatg 14820715  T
Q  244 atctcaaagagttgttgtggg 264  Q
    ||||| |||| ||||||||||    
T  14820714 atctccaagaattgttgtggg 14820694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 6410108 - 6410010
Alignment:
Q  163 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 261  Q
    |||||||||||||||||||||| |||  || |||||||||||| |||||| ||||   |||||||||||||  | |||||||||||||||| |||||||    
T  6410108 catggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgt 6410010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 14802429 - 14802338
Alignment:
Q  172 aactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 263  Q
    ||||||||||||| |||  |||| |||||||| |||||||| |||||  |||||||||||||| | |||||||| ||||||| |||||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtgg 14802338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 6423314 - 6423216
Alignment:
Q  168 aatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 266  Q
    |||||||||| |||||| |||  |||||||||||||||||||||| |||| | ||   ||| ||||| | |||| ||||||||||||||||||||||||    
T  6423314 aatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggat 6423216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 12102378 - 12102321
Alignment:
Q  153 agtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtca 210  Q
    |||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  12102378 agtgaaactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtca 12102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 14818484 - 14818383
Alignment:
Q  163 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtg 262  Q
    |||||||| ||||||| ||||||||| || |||||||||||||| ||||| |||||  ||||| |||||||| | ||| ||||||| |||| ||||| ||    
T  14818484 catggaattaactttgcagttctcaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctg 14818385  T
Q  263 gg 264  Q
    ||    
T  14818384 gg 14818383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 260
Target Start/End: Complemental strand, 7119322 - 7119162
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||| ||| |||| ||| ||||||||  ||   |||||||||||||| |  | ||||||||||||||  |||| | |  |||||||||    
T  7119322 gttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgt 7119223  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 260  Q
    ||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7119222 tgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7119162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 260
Target Start/End: Complemental strand, 7131800 - 7131640
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||| ||| |||| ||| ||||||||  ||   |||||||||||||| |  | ||||||||||||||  |||| | |  |||||||||    
T  7131800 gttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgt 7131701  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 260  Q
    ||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7131700 tgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7131640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 6416068 - 6415973
Alignment:
Q  163 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 258  Q
    ||||||||| |||||| ||||| |||  |||||||||||||||||||||| |||||  || ||||| ||||  | |||||||||||||||| ||||    
T  6416068 catggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgt 6415973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 6589322 - 6589408
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaa 251  Q
    |||||||||||||| ||||| ||   |||||||||||||||||||||| |||||  || ||||| ||||| | ||| ||||||||||    
T  6589322 tggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 10579761 - 10579831
Alignment:
Q  191 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 261  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| | |||  ||||||||||| |||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgt 10579831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 264
Target Start/End: Original strand, 11936195 - 11936373
Alignment:
Q  86 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 185  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  | ||||||||| |||| |  | |  | |||||||||||||||     
T  11936195 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcc 11936294  T
Q  186 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||| ||||||||||| ||||||||   |||| | |||| ||| || || | |||  |||||||||||||||| |||||    
T  11936295 caaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtggg 11936373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 264
Target Start/End: Original strand, 11948175 - 11948353
Alignment:
Q  86 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 185  Q
    ||||||||| |  |||||||  || |||||||||||||||||| ||||| || ||  | ||||||||| |||| |  | |  | |||||||||||||||     
T  11948175 aaggtattgttcatgttttaatgatatgttgtaacattagacatttgaatttaactcgctgttcaagactgaagctacgtacattgaactttgaagttcc 11948274  T
Q  186 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||| ||||||||||| ||||||||   |||| | |||| ||| || || | |||  |||||||||||||||| |||||    
T  11948275 caaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtggg 11948353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 7994102 - 7994275
Alignment:
Q  86 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 185  Q
    |||||||| |||  |||||| ||| ||||||||| || || || |||||| |  ||| |||| |||||||||| |  |  ||||||||||||| |||||     
T  7994102 aaggtatttgttacgttttaaggaaatgttgtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttcc 7994201  T
Q  186 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgtt 259  Q
     ||  | |||||||||||| ||||||| ||||   || |||| |||||| | |||||||||||||||| |||||    
T  7994202 gaagctagaggtgttgaacatgtcaaatacaagggttaatgacgaaacactatatgtgatctcaaagaattgtt 7994275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 6596953 - 6597026
Alignment:
Q  191 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||||||||||||||||||||  |||||  |||||||||||||| | || |  |||||||||| ||||| ||||    
T  6596953 tggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctggg 6597026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 264
Target Start/End: Complemental strand, 553645 - 553480
Alignment:
Q  99 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 198  Q
    ||||||| ||| |||||||||||||||||| |||||||| ||| | ||||||||||||||    | |  | |||||||| ||||||||||| ||||||||    
T  553645 tgttttaaggacatgttgtaacattagacatttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtg 553546  T
Q  199 ttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||   |||| | ||||||||||| || |  ||||||| ||||||||||||| ||||    
T  553545 ttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctggg 553480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 1548423 - 1548522
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||| ||||||||||| ||| |||| |||||||||||||||||||| | ||||  ||||||||||||||| |  ||||||||||||||||||||||||||    
T  1548423 tggactgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 547013 - 546914
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||||||||  |||||||||||| |||||||||||   ||||   |  ||||||||||| | |||||||||||||||||||||||||||    
T  547013 tggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 264
Target Start/End: Original strand, 1524483 - 1524584
Alignment:
Q  163 catggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtg 262  Q
    |||||||||||||||||||||| ||| |||||||||||||| ||||||   ||||   |||||||||||||| | ||| |||||||| |||||||| |||    
T  1524483 catggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtg 1524582  T
Q  263 gg 264  Q
    ||    
T  1524583 gg 1524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 355
Target Start/End: Complemental strand, 1754589 - 1754429
Alignment:
Q  187 aaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggacttggaac 286  Q
    ||||||||||||||||||||||| |||||||||||| | ||||        ||  |||||||||||||||| | |||  |||| || ||||| || |||     
T  1754589 aaattggaggtgttgaacttgtcgaagacaaaaattaaggatg--------tacatgatctcaaagagttgctctggactactgcaattggatttagaaa 1754498  T
Q  287 ggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataa 355  Q
      ||| || ||||||||||||||||||||| ||| ||||||||||| ||||||||  ||| ||||||||    
T  1754497 aatgttataatatcacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataa 1754429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 8187091 - 8187189
Alignment:
Q  166 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||| ||  |||| |||||||||||||||||||| | |||| | |||||||| ||||| | ||||  || ||||||||||||||||||    
T  8187091 ggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtggg 8187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 7307957 - 7307864
Alignment:
Q  168 aatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 261  Q
    |||||||||| |||||| |||||||||||| |||||||||||| | ||| || ||||||||||| || |   | ||||||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgt 7307864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 3438500 - 3438663
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||||||| |||||||| ||||||||  | ||||||| | |||||||   |  || |||||||||||| |||   ||||||||||| |    
T  3438500 gttttaaggagatgttgtaagattagacatttgaacttagctggttgtttaggagtgaatttgtgtgcaatgaactttgatgtttcaaaattggaggtat 3438599  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||| ||||||| | |||| | |||||||| ||| | |  |||| |||||||||||||||||||||    
T  3438600 tgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtggg 3438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 532307 - 532196
Alignment:
Q  147 ttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatc 246  Q
    |||||||||||| |  | |||||||||||||||||| | |||  | |||||||||||||||||| | ||||| |||||||||||||   | ||||||| |    
T  532307 ttcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacc 532208  T
Q  247 tcaaagagttgt 258  Q
    ||||||| ||||    
T  532207 tcaaagaattgt 532196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 570468 - 570406
Alignment:
Q  148 tcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtca 210  Q
    |||| |||||||| || |||| |||||||||||||||||||| | ||||||||||||||||||    
T  570468 tcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgtca 570406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 1513407 - 1513505
Alignment:
Q  166 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||||||| |||| | || |||||||||||||||   |||||  |||||||||||||| | || || ||||||||| ||||| |||||    
T  1513407 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtggg 1513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 264
Target Start/End: Original strand, 1537763 - 1537865
Alignment:
Q  162 gcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 261  Q
    ||||||||||||||||||||||| |||| | || ||||||||||||||| | |||||  || ||||  ||||| ||| ||| ||||||||| ||||| ||    
T  1537763 gcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgt 1537862  T
Q  262 ggg 264  Q
    |||    
T  1537863 ggg 1537865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 1600584 - 1600474
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| |||||| || ||| |||||||| ||||||||  ||   ||||||| | |||| | ||  |||||||||||||||||||| ||| |||||||||    
T  1600584 gttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactttgaagttcttaaactggaggtgt 1600485  T
Q  200 tgaacttgtca 210  Q
    |||||||||||    
T  1600484 tgaacttgtca 1600474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 210
Target Start/End: Original strand, 53761706 - 53761816
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||||||||||||| || ||||||||  |||  |||||||||||||| |    |||||||||||||| ||||| |||  | |||| ||    
T  53761706 gttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagctagaggcgt 53761805  T
Q  200 tgaacttgtca 210  Q
    |||||||||||    
T  53761806 tgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 8184031 - 8184128
Alignment:
Q  167 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||||||  ||| | |||||||||||||||||| | |||| | ||||||||  | || | ||||  |||||||||||||||||||||    
T  8184031 gaatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtggg 8184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 264
Target Start/End: Original strand, 55908669 - 55908826
Alignment:
Q  107 ggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaactt 206  Q
    |||||||||||||  ||||||| ||||| ||  ||   ||||||||||||||||  | | |||| |||||| ||||||   |||| |||||||| |||||    
T  55908669 ggagatgttgtaaggttagacatttgaatttagcctactgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaactt 55908768  T
Q  207 gtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||| | |||    |||||||||||||| | ||| |||||||||||| ||||||||||    
T  55908769 gtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtggg 55908826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 1552766 - 1552865
Alignment:
Q  165 tggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||| ||||||||||| ||| |||| |||| |||||||| |||||| | ||||| ||| ||||||||||| |  ||||||| ||||||| |||| |||||    
T  1552766 tggactgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 227
Target Start/End: Original strand, 7225817 - 7225944
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||||||||||||| |||||||| ||||||||  ||   ||| |||||||||| |  |     |||||||||||||||||| |||||||||| |    
T  7225817 gttttacggagatgttgtaagattagacatttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtct 7225916  T
Q  200 tgaacttgtcaaagacaaaaattgatga 227  Q
    ||||||||||| | |||| | |||||||    
T  7225917 tgaacttgtcacatacaagagttgatga 7225944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 12121458 - 12121525
Alignment:
Q  167 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 234  Q
    |||||||||||||||||| |||| | || ||||||||||||||| | |||||  ||||||||||||||    
T  12121458 gaatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 12121525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 253
Target Start/End: Complemental strand, 641080 - 640927
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||| |||||||||  ||||||| ||||||||  ||||||||    |||| || |  | ||||||||| |||||| | |  | |||||||||||    
T  641080 gttttaaggatatgttgtaatgttagacatttgaacttagccggttgtgatggagtaaacctacttggaatgaaatttgaactaccaatattggaggtgt 640981  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 253  Q
    ||||||||||| | |||||  |||||||||||||| | || |||| ||||||||    
T  640980 tgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaaga 640927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 1519143 - 1519227
Alignment:
Q  167 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaa 251  Q
    |||||||||||||||||| |||| | |||||||||||||||||| | ||||   |||||||  || || | ||||||||||||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 6006351 - 6006235
Alignment:
Q  241 gtgatctcaaagagttgttgtgggatactacatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgtagtagaaaactgcacac 340  Q
    |||||||||| |||||| | |||| |||| ||  | || |||| ||| ||| || || ||||| |||| ||||||| ||| || ||||||||||||| ||    
T  6006351 gtgatctcaatgagttgctttgggctactgcaacttgatttgggacgttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaac 6006252  T
Q  341 gattgagagagataaat 357  Q
     ||||||||||||||||    
T  6006251 aattgagagagataaat 6006235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 558568 - 558499
Alignment:
Q  195 ggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||||   ||| | |||||||||||| || |  |||||||||||||||||||| |||||    
T  558568 ggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtggg 558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 1489361 - 1489405
Alignment:
Q  166 ggaatgaactttgaagttctcaaattggaggtgttgaacttgtca 210  Q
    ||||||||||||||||||| |||| | || |||||||||||||||    
T  1489361 ggaatgaactttgaagttcccaaactagaagtgttgaacttgtca 1489405  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 1508033 - 1508101
Alignment:
Q  196 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||| | || ||  |||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  1508033 gtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtggg 1508101  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 1528338 - 1528394
Alignment:
Q  301 acagagaaaggagtgaggcacgtagtagaaaactgcacacgattgagagagataaat 357  Q
    |||||||| ||||| | ||| || |||||||||||||||| | ||||||||||||||    
T  1528338 acagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaat 1528394  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 264
Target Start/End: Original strand, 45245018 - 45245183
Alignment:
Q  99 tgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtg 198  Q
    ||||||| ||||||||||||||||||| || || |||||     | ||||||||| || ||   | |||||| |||||||||||||  ||| | ||||||    
T  45245018 tgttttaaggagatgttgtaacattaggcatttaaacttagtttgctgttcaagactggaattacgtggaataaactttgaagttccaaaacttgaggtg 45245117  T
Q  199 ttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||| |||||| ||||||   |||||||||||||| |  |||||||||||||||||||| |||||    
T  45245118 ttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 32785773 - 32785856
Alignment:
Q  167 gaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 250  Q
    ||||||||||| ||| || |||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
T  32785773 gaatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 44575529 - 44575587
Alignment:
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 258  Q
    |||| |||||||| |||| | |||||||||| |||||||||||||||||||||||||||    
T  44575529 tgaatttgtcaaaaacaagagttgatgatgacacattgtatgtgatctcaaagagttgt 44575587  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 1037598 - 1037762
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| |||||||||||||  ||||||| ||||| ||  ||   | ||||||||||||||  | | |||| |||||| ||||||   |||| |||||||    
T  1037598 gttttaaggagatgttgtaaggttagacatttgaatttagcctactattcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgt 1037697  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    | ||||||||| | |||    |||||||||||||| | ||| |||||||||||| ||||||||||    
T  1037698 ttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtggg 1037762  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 264
Target Start/End: Original strand, 15092085 - 15092249
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||| ||||| |||  ||| ||| |||||||| || || |||| ||| |||||||  |||||||||||||||| ||||| | |  |||||||||    
T  15092085 gttttaaggaaatgttataagcttaaacatttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggaggtgt 15092184  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    |||| |||||| | |||||  || ||||| ||||| | |||| ||||||||||| ||||||||||    
T  15092185 tgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtggg 15092249  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 7977757 - 7977609
Alignment:
Q  86 aaggtattggttgtgttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttct 185  Q
    |||||||||||   |||||| |||||||||||||||||||||| || ||| |  || |||||||||| ||||| |  | ||||||||| || || |||      
T  7977757 aaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcctgttgttcaagggtgaatctacgtggaatgaaattcgacgtttg 7977658  T
Q  186 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 234  Q
    |||| | ||||  |||||||||||| | |||| | |||||||| |||||    
T  7977657 caaactcgaggctttgaacttgtcacatacaacagttgatgataaaaca 7977609  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 253
Target Start/End: Complemental strand, 10614758 - 10614605
Alignment:
Q  100 gttttatggagatgttgtaacattagacacttgaacttgaccggttgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgt 199  Q
    |||||| ||| ||||||||| ||||| || ||||||||  ||  ||||  || |||||| |  | |||||||||| |||  |||| |||  |||||||||    
T  10614758 gttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttcccaatctggaggtgt 10614659  T
Q  200 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 253  Q
    ||||||||||||| || ||  || ||||| ||||| | ||||||||||| ||||    
T  10614658 tgaacttgtcaaatacgaaggttaatgataaaacactctatgtgatctcgaaga 10614605  T

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Target: scaffold0295 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 264
Target Start/End: Original strand, 603 - 722
Alignment:
Q  145 tgttcaagagtgaaaccgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtga 244  Q
    ||||||||||||||||  | | |||| |||||| ||||||   |||| |||||||| ||||||||| | ||||   | |||||||||||| | ||| |||    
T  603 tgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatga 702  T
Q  245 tctcaaagagttgttgtggg 264  Q
    |||| |||| ||||||||||    
T  703 tctcgaagaattgttgtggg 722  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 264
Target Start/End: Complemental strand, 39256 - 39185
Alignment:
Q  193 gaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 264  Q
    ||||||||||||||| ||   |||||  || ||||||||||| | ||||||||||||||||||||| |||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtggg 39185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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