View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21086_high_1 (Length: 662)

Name: NF21086_high_1
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21086_high_1
NF21086_high_1
[»] chr5 (5 HSPs)
chr5 (21-658)||(17690076-17690715)
chr5 (380-658)||(17683511-17683789)
chr5 (484-657)||(17570590-17570763)
chr5 (487-628)||(17621824-17621965)
chr5 (514-630)||(17563521-17563637)
[»] chr7 (6 HSPs)
chr7 (244-658)||(14653037-14653451)
chr7 (380-658)||(14661472-14661750)
chr7 (21-223)||(14653448-14653651)
chr7 (484-657)||(14757772-14757945)
chr7 (462-628)||(14749831-14749997)
chr7 (514-630)||(14764962-14765078)
[»] chr8 (1 HSPs)
chr8 (506-658)||(24395374-24395526)
[»] chr1 (4 HSPs)
chr1 (506-630)||(15196051-15196175)
chr1 (506-630)||(15216469-15216593)
chr1 (506-630)||(15195400-15195524)
chr1 (506-630)||(15215818-15215942)


Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 21 - 658
Target Start/End: Original strand, 17690076 - 17690715
Alignment:
Q  21 attggtcaaggtaatggaggacgattaaaattatcgagaggaata-tacttgggagcttgtagattgtccacatggaaaa-aatatcattgaaattaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||     
T  17690076 attggtcaaggtaatggaggacgattaaaattatcgagaggaataatacttaggagcttgtagattgtccacatggaaaaaaatatcattgaaattaaac 17690175  T
Q  119 gggtcagttaaaacagcttaatcatgatggctcaatagagacgcaccaggcttaatcatgaagccttgatatctctttttgcacaaaaagggtgaaacat 218  Q
    |||||| |||||| |||||||||| |||||||||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  17690176 gggtcaattaaaaaagcttaatcaagatggctcaatagagatgcacaaggcttaaccatgaagccttgatagctctttttgcacaaaaagggtgaaacat 17690275  T
Q  219 gtttcaactataagtgaaatctacttttctaaatgccttacttgaagaagagatctatgtggagaatccacaaggattgtagtcaaaggaaatgaaggcc 318  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17690276 gtttcaactataagtgaaatctacttttctaaataccttacttgaagaagagatctatgtggagaatccacaaggattgtagtcaaaggaaatgaaggcc 17690375  T
Q  319 aagttttgagactaagaaaatctttatatggattgaagtaagcctcccgagcatggtgagatcatccaagagcctgcacaaaaattgaacaggatcctta 418  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  17690376 aagttttaagactaagaaaatctttatatgggttgaagcaagcctcctgagcatggtgagatcatccaagagcctccacaaaaattgaacaggatccttc 17690475  T
Q  419 gacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacacgtcggaaca 518  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17690476 aacctttttggatcaataacaagcttgttaacggacactcgaatgtgtgagatcatcacgtcttttatttttgagagaccattaggaacacgtcggaaca 17690575  T
Q  519 agttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggcatgggattttcaat 618  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  17690576 agttatacattctttccaaatcttcatatttagtaccacaaatcatgtttacaaacccagagttctccatattgattaatctaggcatgggattttcaat 17690675  T
Q  619 catctccttctcgatcgcattaataattttcttttcagtc 658  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17690676 catctccttctcgatcgcattaataattttcttttcagtc 17690715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 380 - 658
Target Start/End: Original strand, 17683511 - 17683789
Alignment:
Q  380 tcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcactt 479  Q
    |||||||| |||||   |||||||| |||||||||||   |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  17683511 tcatccaatagcctctgcaaaaattcaacaggatcctccaacctctttggatcagtaacaagcttgtcaacggacactcgaatgtgtgagatcatcgctt 17683610  T
Q  480 cttttatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaaga 579  Q
    ||| ||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  17683611 cttgtatttttgagagaccatcaggaacccgacggaacaagttatacattctttccaaatcttcatatttattaccacaaagcatgtttacaaacccaga 17683710  T
Q  580 gttctccatattgattaatctcggcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 658  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17683711 gttctccatattgattaatctcagcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 17683789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 484 - 657
Target Start/End: Complemental strand, 17570763 - 17570590
Alignment:
Q  484 tatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttc 583  Q
    |||||| ||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||  |||||||||||||||||| ||||  ||||||    
T  17570763 tattttcgagagaccattagtaacacgacgaaacaagttatacattcttcccaaatcttcatatttatcaccacaaagcatgtttactaaccccgagttc 17570664  T
Q  584 tccatattgattaatctcggcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagt 657  Q
    ||||||| |||||||||  ||||| |||||||||||||||||||||||||| || || |||| |||||||||||    
T  17570663 tccatatggattaatctaagcatgtgattttcaatcatctccttctcgatcacactagtaatcttcttttcagt 17570590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 487 - 628
Target Start/End: Original strand, 17621824 - 17621965
Alignment:
Q  487 ttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctcc 586  Q
    |||| ||||| ||| ||||||||| ||||||||||||||||||||  |||| ||||||||||||  |||||||| ||||||||| |||| ||| || |||    
T  17621824 tttttagagaacatcaggaacacgacggaacaagttatacattctacccaagtcttcatatttatcaccacaaatcatgtttactaacccagaattttcc 17621923  T
Q  587 atattgattaatctcggcatgggattttcaatcatctccttc 628  Q
    |||| |||||||||  |||||  ||||||||| |||||||||    
T  17621924 atatggattaatctaagcatgtcattttcaataatctccttc 17621965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 630
Target Start/End: Complemental strand, 17563637 - 17563521
Alignment:
Q  514 gaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggcatgggattt 613  Q
    ||||||||||||||| ||  |||||||||||||||||  | ||| |||||||||||| |||| |||  ||||| ||| |||||||||  ||||| |||||    
T  17563637 gaacaagttatacatcctacccaaatcttcatatttatcatcaccaagcatgtttactaacccagaagtctccttatagattaatctaagcatgtgattt 17563538  T
Q  614 tcaatcatctccttctc 630  Q
    || | ||||||||||||    
T  17563537 tcgagcatctccttctc 17563521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 244 - 658
Target Start/End: Complemental strand, 14653451 - 14653037
Alignment:
Q  244 tttctaaatgccttacttgaagaagagatctatgtggagaatccacaaggattgtagtcaaaggaaatgaaggccaagttttgagactaagaaaatcttt 343  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14653451 tttctaaataccttacatgaagaagagatctatgtggagaatccacaaggattgtagtcaaaggaaatgaaggccaagttttgaaactaagaaaatcttt 14653352  T
Q  344 atatggattgaagtaagcctcccgagcatggtgagatcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagct 443  Q
    |||||| |||||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  14653351 atatgggttgaagcaagcctcccgatcatgttgagatcatccaagagcctccacaaaaattgaacaggatccttaaccctttttggatcagtaacaagct 14653252  T
Q  444 tgttaacggacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttc 543  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653251 tgttaacagacactcgaatgtgtgagatcatcacttcttttatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttc 14653152  T
Q  544 atatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggcatgggattttcaatcatctccttctcgatcgcattaata 643  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14653151 atatttagtaccacaaagcatgtttacaaacccagagttctccatattgattaatctcagcatgggattttcaatcatctccttctcgatcgcattaata 14653052  T
Q  644 attttcttttcagtc 658  Q
    |||||||||||||||    
T  14653051 attttcttttcagtc 14653037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 380 - 658
Target Start/End: Complemental strand, 14661750 - 14661472
Alignment:
Q  380 tcatccaagagcctgcacaaaaattgaacaggatccttagacctttttggatcagtaacaagcttgttaacggacactcgaatgtgtgagatcatcactt 479  Q
    ||||||||||||||   |||||||| |||||||||||   |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  14661750 tcatccaagagcctctgcaaaaattcaacaggatcctccaacctctttggatcagtaacaagcttgtcaacggacactcgaatgtgtgagatcatcgctt 14661651  T
Q  480 cttttatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaaga 579  Q
    ||| ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  14661650 cttgtatttttaagagaccatcaggaacacgacggaacaagttatacattctttccaaatcttcatatttattaccacaaagcatgtttacaaacccaga 14661551  T
Q  580 gttctccatattgattaatctcggcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 658  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14661550 gttctccatattgattaatctcagcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 14661472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 14653651 - 14653448
Alignment:
Q  21 attggtcaaggtaatggaggacgattaaaattatcgagaggaata-tacttgggagcttgtagattgtccacatggaaaaaatatcattgaaattaaatg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  14653651 attggtcaaggtaatggaggacgattaaaattatcgagaggaataatacttaggagcttgtagattgtccacatggaaaaaatatcattgaaattaaacg 14653552  T
Q  120 ggtcagttaaaacagcttaatcatgatggctcaatagagacgcaccaggcttaatcatgaagccttgatatctctttttgcacaaaaagggtgaaacatg 219  Q
    ||||| ||||||  |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14653551 ggtcaattaaaaaggcttaatcatgatggctcaatagagatgcacaaggattaatcatgaagccttgatagctctttttgcacaaaaagggtgaaacatg 14653452  T
Q  220 tttc 223  Q
    ||||    
T  14653451 tttc 14653448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 484 - 657
Target Start/End: Original strand, 14757772 - 14757945
Alignment:
Q  484 tatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttc 583  Q
    |||||| ||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||  |||||||||||||||||| ||||  ||||||    
T  14757772 tattttcgagagaccattagtaacacgacgaaacaagttatacattcttcccaaatcttcatatttatcaccacaaagcatgtttactaaccccgagttc 14757871  T
Q  584 tccatattgattaatctcggcatgggattttcaatcatctccttctcgatcgcattaataattttcttttcagt 657  Q
    ||||||| |||||||||  ||||| |||||||||||||||||||||||||| || || |||| |||||||||||    
T  14757872 tccatatggattaatctaagcatgtgattttcaatcatctccttctcgatcacactagtaatcttcttttcagt 14757945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 462 - 628
Target Start/End: Original strand, 14749831 - 14749997
Alignment:
Q  462 tgtgtgagatcatcacttcttttatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaag 561  Q
    |||||||  ||||||||||   ||||||  ||||||||| |||||||||  |||||||||||||||||||  ||||||| | |||||||  |||||||||    
T  14749831 tgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaagttatacattctacccaaatcgttatatttatcaccacaaag 14749930  T
Q  562 catgtttacaaaccaagagttctccatattgattaatctcggcatgggattttcaatcatctccttc 628  Q
    ||||||||| |||| ||| |||| ||  | |||||||||  ||||| ||||||||||  ||||||||    
T  14749931 catgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 14749997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 630
Target Start/End: Original strand, 14764962 - 14765078
Alignment:
Q  514 gaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggcatgggattt 613  Q
    ||||||||||||||| ||  |||||||||||||||||  | ||| |||||||||||| |||| |||  ||||| ||| |||||||||  ||||| |||||    
T  14764962 gaacaagttatacatcctacccaaatcttcatatttatcatcaccaagcatgtttactaacccagaagtctccttatagattaatctaagcatgtgattt 14765061  T
Q  614 tcaatcatctccttctc 630  Q
    || | ||||||||||||    
T  14765062 tcgagcatctccttctc 14765078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 506 - 658
Target Start/End: Original strand, 24395374 - 24395526
Alignment:
Q  506 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggca 605  Q
    ||||| ||||||||||||||||| ||  |||||||||||||||||  | ||||||||||||| || || | ||| |||||||||| |||||| ||  |||    
T  24395374 acacggcggaacaagttatacatcctacccaaatcttcatatttatcatcacaaagcatgttgactaaaccagaattctccatatggattaacctgagca 24395473  T
Q  606 tgggattttcaatcatctccttctcgatcgcattaataattttcttttcagtc 658  Q
    || ||||||||||||||| | |||| | | | ||| |||| ||||||||||||    
T  24395474 tgtgattttcaatcatctgcgtctccaccactttattaatcttcttttcagtc 24395526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 506 - 630
Target Start/End: Original strand, 15196051 - 15196175
Alignment:
Q  506 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggca 605  Q
    ||||| ||||||||||||||||||||   |||||||| ||| |||  | ||| || ||||||||| |||| |||||||||||||| |||||||||  |||    
T  15196051 acacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagca 15196150  T
Q  606 tgggattttcaatcatctccttctc 630  Q
    || ||||||| ||||||||||||||    
T  15196151 tgtgattttcgatcatctccttctc 15196175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 506 - 630
Target Start/End: Original strand, 15216469 - 15216593
Alignment:
Q  506 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggca 605  Q
    ||||| ||||||||||||||||||||   |||||||| ||| |||  | ||| || ||||||||| |||| |||||||||||||| |||||||||  |||    
T  15216469 acacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatgtttactaacccagagttctccatatggattaatctaagca 15216568  T
Q  606 tgggattttcaatcatctccttctc 630  Q
    || ||||||| ||||||||||||||    
T  15216569 tgtgattttcgatcatctccttctc 15216593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 630
Target Start/End: Original strand, 15195400 - 15195524
Alignment:
Q  506 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggca 605  Q
    ||||| ||||||||||||||||||||   |||||||||||| |||  | ||| || ||||||||| |||| |||||||||||||  |||||||||   ||    
T  15195400 acacgacggaacaagttatacattctactcaaatcttcatacttatcatcaccaatcatgtttactaacccagagttctccataaggattaatctaatca 15195499  T
Q  606 tgggattttcaatcatctccttctc 630  Q
    || ||||||| ||||||||||||||    
T  15195500 tgtgattttcgatcatctccttctc 15195524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 506 - 630
Target Start/End: Original strand, 15215818 - 15215942
Alignment:
Q  506 acacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaagcatgtttacaaaccaagagttctccatattgattaatctcggca 605  Q
    ||||| ||||||||||||||||||||   |||||||||||| |||  | ||| || ||||||||| |||| |||||||||||||  |||||||||   ||    
T  15215818 acacgacggaacaagttatacattctactcaaatcttcatacttatcatcaccaatcatgtttactaacccagagttctccataaggattaatctaatca 15215917  T
Q  606 tgggattttcaatcatctccttctc 630  Q
    || ||||||| ||||||||||||||    
T  15215918 tgtgattttcgatcatctccttctc 15215942  T

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