View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_high_19 (Length: 239)
Name: NF21086_high_19
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39127054 - 39126834
Alignment:
| Q |
1 |
ctattatgtttacaagatacatggattctccatagagaacttgtccattatccatgttctgatgagtggtaagattgagatttggtgctttggtaactat |
100 |
Q |
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| T |
39127054 |
ctataatgtttacaagatacatggattctccatagagaacttgtccattatccatgttctgatgagtggtaagattgagatttggtgctttggtaactat |
39126955 |
T |
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| Q |
101 |
cttggtcgtattcaacaacagagaccctgtcgttctttgataaattgtgtttgcggcttgttattgatttggagtggaaagaaaatgctcgctgctgtga |
200 |
Q |
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| T |
39126954 |
cttggtcgtattcaacaacagagaccctgtcgttctttgctaaattgtgtttgcggcttgttattgatttggggtggaaagaaaatgctcgctgctgtga |
39126855 |
T |
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| Q |
201 |
gtgaaattaccaacaaactca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39126854 |
gtgaaattaccaacaaactca |
39126834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 39480388 - 39480428
Alignment:
| Q |
16 |
gatacatggattctccatagagaacttgtccattatccatg |
56 |
Q |
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| T |
39480388 |
gatacatggattctccatagagaacttgtccattacccatg |
39480428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 11593123 - 11593176
Alignment:
| Q |
68 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
120 |
Q |
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| T |
11593123 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
11593176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 11644996 - 11644943
Alignment:
| Q |
68 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
120 |
Q |
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|||||||||||||||| |||| ||||||||| |||||| || |||||||||||| |
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| T |
11644996 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
11644943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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