View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_high_21 (Length: 220)
Name: NF21086_high_21
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 4651688 - 4651882
Alignment:
| Q |
1 |
catattcttacttgtttgaaaagttgagttaaacatgaacgaaatgaagtaaagcgttttaggaatccatctatgctctctaatcttcaagttgttgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4651688 |
catattcttacttgtttgaaaagttgagttaaacatgaacgagatgaagtaaagcgttttaggaatccatctatgctctctgatcttcaagttgttgtca |
4651787 |
T |
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| Q |
101 |
tgccctcaaagaaatgtccacgaagatacgccggaacccaatgttgtttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
195 |
Q |
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| T |
4651788 |
tgcccccaaagaaatgtccacgaagatacgccggaacccaatgttgtttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
4651882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 16149081 - 16149275
Alignment:
| Q |
1 |
catattcttacttgtttgaaaagttgagttaaacatgaacgaaatgaagtaaagcgttttaggaatccatctatgctctctaatcttcaagttgttgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |
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| T |
16149081 |
catattcttacttgtttgaaaagttgagttaaacatgaacgagatgaagtaaagcgttttaggaatccatttatgctctctgatcttccagttgttgtca |
16149180 |
T |
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| Q |
101 |
tgccctcaaagaaatgtccacgaagatacgccggaacccaatgttgtttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
195 |
Q |
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| T |
16149181 |
tgcccccaaagaaatgtccacgaagatacgccggaacccaatgttgcttaacttcatacaagccttttatgtgcttatttgcttctagattgtac |
16149275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 23302980 - 23302786
Alignment:
| Q |
1 |
catattcttacttgtttgaaaagttgagttaaacatgaacgaaatgaagtaaagcgttttaggaatccatctatgctctctaatcttcaagttgttgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||| |
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| T |
23302980 |
catattcttacttgtttgaaaagttgagttaaacatgaacgagatgaagtaaagcgttttaggaatccatttatgctctctgatcttccagttgttgtca |
23302881 |
T |
|
| Q |
101 |
tgccctcaaagaaatgtccacgaagatacgccggaacccaatgttgtttaacttcatacaagccttttatgtgcttgtttgcttctagtttgtac |
195 |
Q |
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| T |
23302880 |
tgcccccaaagaaatgtccacgaagatacgccggaacccaatgttgcttaacttcatacaagccttttatgtgcttatttgcttctagattgtac |
23302786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36758458 - 36758532
Alignment:
| Q |
1 |
catattcttacttgtttgaaaagttgagttaaacatgaacgaaatgaagtaaagcgttttaggaatccatctatg |
75 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
36758458 |
catattcttacttgtttgaaaagttgagttaaacatgaacgagatgaagtaaagcgttttaggaatccatttatg |
36758532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40109604 - 40109678
Alignment:
| Q |
1 |
catattcttacttgtttgaaaagttgagttaaacatgaacgaaatgaagtaaagcgttttaggaatccatctatg |
75 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
40109604 |
catattcttacttgtttgaaaagttgagttaaacatgaacgagatgaagtaaagcgttttaggaattcatttatg |
40109678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19083297 - 19083363
Alignment:
| Q |
1 |
catattcttacttgtttgaaaagttgagttaaacatgaacgaaatgaagtaaagcgttttaggaatc |
67 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
19083297 |
catattcttacttgtttgaaaagttgggttaaacatgaacgagatgaagtaaagcgttttaggaatc |
19083363 |
T |
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