View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_high_4 (Length: 472)
Name: NF21086_high_4
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 56059190 - 56059439
Alignment:
| Q |
17 |
tacataacgtgatttatatatattgctttgcttccccatatagcttagttatgcatttgacgggaaggttgggaatcattgtcattaaaattttctatgt |
116 |
Q |
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| T |
56059190 |
tacataacgtgatttatatatattgc-----ttccccatatagcttagctatgcatttgacgggaaggttgggaatcattgtcattaaaattttctatgt |
56059284 |
T |
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| Q |
117 |
tggccagctttctttttcagttatcaaggacgacagctgatcgataatataatgttgaatgcaacttttgttgttttcagaagtagaaatttcaccaaaa |
216 |
Q |
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| T |
56059285 |
tggccagctttctttttcagttatcaaggacgacagctgatcg-----ataatgttgaatgcaacatttgttgttttcagaagtagaaatttcaccaaaa |
56059379 |
T |
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| Q |
217 |
tatgaaagc--------aataaactgtcaccaaacaatggaacaacaacttcttctgtac |
268 |
Q |
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| T |
56059380 |
tatgaaagcaatataataatatactgtcaccaaacaatggaacaacaacttcttctgtac |
56059439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 290 - 464
Target Start/End: Original strand, 56059579 - 56059757
Alignment:
| Q |
290 |
attaatgaaggttttagtaaggacaatatacaattattgtaaa-tatttacggtacctggtattggccatgcatttgaatgatgatta---ttaggtcca |
385 |
Q |
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| T |
56059579 |
attaatgaaggttttagcaaggacaatatacaattattgtaaaatatttacggtacctggtattggccatgcatttgaatgatgattattattaggtcca |
56059678 |
T |
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| Q |
386 |
tcacaatgaagtgagccagtaatgaggacagttgatagcttctcctctccatatccagcaatttccacaacttcttctc |
464 |
Q |
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| T |
56059679 |
tcacaatgaagtgagccagtaatgagtacagttgatagcttctcctctccatatccagcaatttccacaacttcttctc |
56059757 |
T |
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