View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_high_5 (Length: 441)
Name: NF21086_high_5
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 290 - 432
Target Start/End: Original strand, 11455842 - 11455984
Alignment:
| Q |
290 |
aattattttttgcctaaaaaatgaaagggtgattaatatgaacccgatttaaaagtgaagctaaatggaggtgtgtgttaatcatcgatcttgtttggaa |
389 |
Q |
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| T |
11455842 |
aattattttttgcctaaaaaatgaaagggtgattaatatgaacccgatttaaaagtgaagctaaacgaaggcatgtgttaatcatcgatcttgtttggaa |
11455941 |
T |
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| Q |
390 |
ataaatggaaaggttgtttcgaggtgatccagtcgggcctatg |
432 |
Q |
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| T |
11455942 |
ataaatggaaaggttgtttcgaggtgatccagtcgggactatg |
11455984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 278 - 432
Target Start/End: Complemental strand, 11531854 - 11531699
Alignment:
| Q |
278 |
gttttgtctacgaattattttttgcctaaaaaa-tgaaagggtgattaatatgaacccgatttaaaagtgaagctaaatggaggtgtgtgttaatcatcg |
376 |
Q |
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| T |
11531854 |
gttttgtctatcaattatttttttcctaaaaaaatgaaagggtgactaatatgaacccgatttaaaagtgaagctaaacggaggcgtgtgttaatcatcg |
11531755 |
T |
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| Q |
377 |
atcttgtttggaaataaatggaaaggttgtttcgaggtgatccagtcgggcctatg |
432 |
Q |
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| T |
11531754 |
atcttgtttggaaataaatggaaaggttgtttcgaggtgatccagtcgggtctatg |
11531699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 11531949 - 11531840
Alignment:
| Q |
149 |
ttaacaatagaacaaagaacaatccttttaaaaaatagaaccaacaacatttgaacttggtcgatatttggttataannnnnnnatactttataagtttt |
248 |
Q |
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| T |
11531949 |
ttaacaatagaacgaagaacaatccttttaaaaaatagaacgaacaacatttgaacttggtcgatatttggttatactttttttataccttataagtttt |
11531850 |
T |
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| Q |
249 |
gtctatcaat |
258 |
Q |
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| T |
11531849 |
gtctatcaat |
11531840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 11455737 - 11455812
Alignment:
| Q |
149 |
ttaacaatagaacaaagaacaatccttttaaaaaatagaaccaacaacatttgaacttggtcgatatttggttata |
224 |
Q |
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| T |
11455737 |
ttaacaatagaacgaagaacaatccttttaaaaaatagaacgaacaacatttgaacttggtcgatatttggttata |
11455812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 11454734 - 11454766
Alignment:
| Q |
17 |
attgttggtttcgtagagtttaaatatcttata |
49 |
Q |
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| T |
11454734 |
attgttggtttcgtagagtttaaatatcttata |
11454766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 11494418 - 11494350
Alignment:
| Q |
149 |
ttaacaatagaacaaagaacaatccttttaaaaa-atagaaccaacaacatttgaacttggtcgatatt |
216 |
Q |
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|||||||||||||||| |||||||||| ||||| ||||||| |||| |||||||||| |||| ||||| |
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| T |
11494418 |
ttaacaatagaacaaacaacaatccttaaaaaaatatagaacgaacatcatttgaactcggtccatatt |
11494350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 11532083 - 11532051
Alignment:
| Q |
17 |
attgttggtttcgtagagtttaaatatcttata |
49 |
Q |
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| T |
11532083 |
attgttggtttcgtagagtttaaatatcttata |
11532051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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