View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21086_high_9 (Length: 344)

Name: NF21086_high_9
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21086_high_9
NF21086_high_9
[»] chr7 (6 HSPs)
chr7 (1-329)||(14627317-14627645)
chr7 (1-217)||(14652734-14652950)
chr7 (1-221)||(14661169-14661389)
chr7 (1-212)||(14750119-14750330)
chr7 (1-221)||(14758032-14758252)
chr7 (9-173)||(14765240-14765404)
[»] chr5 (5 HSPs)
chr5 (1-329)||(17701848-17702176)
chr5 (1-221)||(17683872-17684092)
chr5 (1-217)||(17690802-17691018)
chr5 (1-221)||(17570283-17570503)
chr5 (9-173)||(17563195-17563359)
[»] chr1 (4 HSPs)
chr1 (1-174)||(15195685-15195858)
chr1 (1-186)||(15196324-15196509)
chr1 (1-174)||(15216103-15216276)
chr1 (1-186)||(15216742-15216927)
[»] scaffold1961 (1 HSPs)
scaffold1961 (1-186)||(22-207)
[»] chr8 (1 HSPs)
chr8 (101-186)||(24395647-24395732)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 14627317 - 14627645
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    |||||||||||||||||||||||||| || | |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
14627317 tgttatttattcaaaccagataaggaatcgattgtcgaatacgcttttggagtttgtatttaaagagcgtgccggggaagatgttaacagagaactgatt 14627416  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14627417 agaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 14627516  T
201 aatcccataaatatattgagtttgtgtagttgctttagttggaatcctattaaggatacatgttgcaattttaagtgcttctccctagtgtgattctagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14627517 aatcccataaatatattgagtttgtgtagttgctttagttggaatcctattaaggatacatgttgcaattttaagtgcttctccctagtgtgattctagt 14627616  T
301 aagttagaaagagcagtcatacttcttac 329  Q
    |||||||||||||||||||||||||||||    
14627617 aagttagaaagagcagtcatacttcttac 14627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 14652734 - 14652950
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
14652734 tgttatttattcaaaccagataaggactcgattgtcgaatacgcttttggagtttgtatttaaggagcgtgccggggaagatgttaacagagaactgatt 14652833  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14652834 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 14652933  T
201 aatcccataaatatatt 217  Q
    ||||||| |||||||||    
14652934 aatcccagaaatatatt 14652950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14661169 - 14661389
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
14661169 tgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 14661268  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
14661269 agaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgagactccttttctgcaagttttagctgaatcttacaaggctg 14661368  T
201 aatcccataaatatattgagt 221  Q
    ||||  | |||||||||||||    
14661369 aatctgagaaatatattgagt 14661389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14750330 - 14750119
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||||| ||||    
14750330 tgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtattcaaggagcatgctgcggaagatgttaatagagaaccgatt 14750231  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    |||||| |  |||||||||| |||||||||||||| | |||||||||| ||| |||||||||||||||| | ||||||| |||||| |  || | |||||    
14750230 agaaatctatcaaagatgctaatggatttaggtccctttgtttatgaggaagaatttgagactccttttttacaagtttcagctgagttctatagggctg 14750131  T
201 aatcccataaat 212  Q
    ||||||| ||||    
14750130 aatcccagaaat 14750119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14758252 - 14758032
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| || |||| |||||| ||||| |||||||||||||| | ||||||||||    
14758252 tgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagatgttaatatagaactgatt 14758153  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    | |||| ||||||||||||| |||||||||||| |||||||||| ||||||| ||| |||||| | ||||| ||||||| |||||| |  |||| |||||    
14758152 aaaaatattacaaagatgctaatggatttaggttcttctgtttaagagcaagaattcgagacttcgtttctacaagtttcagctgagttctacagggctg 14758053  T
201 aatcccataaatatattgagt 221  Q
    |||| || |||| ||| ||||    
14758052 aatctcagaaatttatcgagt 14758032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 14765404 - 14765240
Alignment:
9 attcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgattagaaatgt 108  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||| || |||  ||  ||||||||||| |||| |||||| |||| ||||||||||| | |    
14765404 attcaaaccagataaggactcgactgttgaatatgcttttggaattagtacacagtgagcgtgccggcgaagttgttaatagaggactgattagaagtat 14765305  T
109 tacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgc 173  Q
     ||||||||||| || |||  ||||||||| ||||||||| ||| |||||||| |||||||||||    
14765304 aacaaagatgctaattgatacaggtccttccgtttatgaggaagaatttgagaatccttttctgc 14765240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 17702176 - 17701848
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
17702176 tgttatttattcaaaccagataaggactcgactgtcgaatacgcttttggagtttgtacttaaagagcgtgccggggaagatgttaacagagaactgatt 17702077  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17702076 agaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 17701977  T
201 aatcccataaatatattgagtttgtgtagttgctttagttggaatcctattaaggatacatgttgcaattttaagtgcttctccctagtgtgattctagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
17701976 aatcccataaatatattgagtttgtgtagttgctttagttggaatcttattaaggaaacatgttgcaattttaagtgcttctccctagtgtgattctagt 17701877  T
301 aagttagaaagagcagtcatacttcttac 329  Q
    |||||||||| || | |||||||||||||    
17701876 aagttagaaatagaaatcatacttcttac 17701848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17684092 - 17683872
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
17684092 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtatttaaggagtgtgccggggaagatgttaacagagaactgatt 17683993  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
17683992 agaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagaatttgagactccttttctgcaagttttagctgaatcttacaaggctg 17683893  T
201 aatcccataaatatattgagt 221  Q
    ||||| | |||||||| ||||    
17683892 aatccgagaaatatatcgagt 17683872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 17691018 - 17690802
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17691018 tgttatttattcaaaccagataaggaatcgattgtcgaatatgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 17690919  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
17690918 agaaatgttacaaagatgctaattgatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 17690819  T
201 aatcccataaatatatt 217  Q
    ||||||| |||||||||    
17690818 aatcccagaaatatatt 17690802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17570283 - 17570503
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||| ||||| ||||| ||||||| ||||||||||| ||||||||| || |||| |||||| ||||| |||||||||||||| | ||||||||||    
17570283 tgttatttactcaaaacagatcaggactcgactgtcgaatatgcttttggaattagtatgcaaggaacgtgctggggaagatgttaatatagaactgatt 17570382  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctgaatcttacaaggctg 200  Q
    | |||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||| | ||||| ||||||| |||||| |  |||| |||||    
17570383 aaaaatattacaaagatgctaatggatttaggttcttctgtttatgagcaagaattcgagacttcgtttctacaagtttcagctgagttctacagggctg 17570482  T
201 aatcccataaatatattgagt 221  Q
    |||| || |||| ||| ||||    
17570483 aatctcagaaatttatcgagt 17570503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 173
Target Start/End: Original strand, 17563195 - 17563359
Alignment:
9 attcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgattagaaatgt 108  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||| || |||  ||  ||||||||||| |||| |||||| |||| ||||||||||| | |    
17563195 attcaaaccagataaggactcgactgttgaatatgcttttggaattagtacgcagtgagcgtgccggcgaagttgttaatagaggactgattagaagtat 17563294  T
109 tacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgc 173  Q
     ||||||||||| || |||  ||||||||| ||||||| | ||| |||||||| |||||||||||    
17563295 aacaaagatgctaattgatacaggtccttccgtttatggggaagaatttgagaatccttttctgc 17563359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 15195858 - 15195685
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| ||| || |||| |||| |   ||| || |||| |||||||| | || |||||    
15195858 tgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaagtactatgctggagaagttgttaacataaaagtgatt 15195759  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgca 174  Q
    |||||| | ||||| ||||| ||||||||||| ||||| ||||||| ||||| |||||||| ||||||||||||    
15195758 agaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatccttttctgca 15195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15196509 - 15196324
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||  || |||| ||||||   ||| || |||| |||| | ||| ||||||||    
15196509 tgttatttattcaaaccagataaggactcgattgtcgaatatgcttttggtattagtatgcaaggactatgctggagaagttgttgatagaaaactgatt 15196410  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctga 186  Q
    ||| || | ||||| ||||| ||||||||||||||||| ||||||  ||||| |||||||| |||||| |||||||||| ||||||    
15196409 agatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctga 15196324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 15216276 - 15216103
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| ||| || |||| |||| |   ||| || |||| |||||||| | || |||||    
15216276 tgttatttattcaaaccagataaggactcgattgtcgaatacgctttgggaattagtatgcaagtactatgctggagaagttgttaacataaaagtgatt 15216177  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgca 174  Q
    |||||| | ||||| ||||| ||||||||||| ||||| ||||||| ||||| |||||||| ||||||||||||    
15216176 agaaatataacaaatatgctaatggatttaggaccttccgtttatgtgcaagaatttgagaatccttttctgca 15216103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 15216927 - 15216742
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||||  || |||| ||||||   ||| || |||| |||| | ||| ||||||||    
15216927 tgttatttattcaaaccagataaggactcgattgtcgaatatgcttttggtattagtatgcaaggactatgctggagaagttgttgatagaaaactgatt 15216828  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctga 186  Q
    ||| || | ||||| ||||| ||||||||||||||||| ||||||  ||||| |||||||| |||||| |||||||||| ||||||    
15216827 agatatataacaaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctga 15216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1961 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1961
Description:

Target: scaffold1961; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 207 - 22
Alignment:
1 tgttatttattcaaaccagataaggactcaactgtcgaatacgcttttggagtttgtattcaaggagcgtgccggggaagatgttaacagagaactgatt 100  Q
    ||||||||||||||||||||||||||||| | | | ||||| ||||||||  ||  ||| ||||||   ||| | |||||  ||||| | | ||||||||    
207 tgttatttattcaaaccagataaggactcgatttttgaatatgcttttgggattaatatgcaaggactatgctgaggaagtcgttaataaaaaactgatt 108  T
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctga 186  Q
    |||||  | || || ||||| ||||||||||||||||| ||||||  ||||| |||||||| |||||| |||||||||| ||||||    
107 agaaaaataacgaatatgctaatggatttaggtccttccgtttatatgcaagaatttgagaatcctttgctgcaagtttcagctga 22  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 24395732 - 24395647
Alignment:
101 agaaatgttacaaagatgctgatggatttaggtccttctgtttatgagcaagtatttgagactccttttctgcaagttttagctga 186  Q
    |||||| | ||||| ||||| ||||||||||||||  |||||||||  ||||  |||||| ||| |||||| ||||||| ||||||    
24395732 agaaatataacaaaaatgctaatggatttaggtccagctgtttatggtcaagattttgaggctcattttcttcaagtttcagctga 24395647  T

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