View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21086_low_10 (Length: 289)
Name: NF21086_low_10
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 30654833 - 30654605
Alignment:
| Q |
46 |
gaacccacttaaattgtgcatgagctttaccgaagcagaagctagcgaccggagcgagcatctaaacacgcagatctgaacttggactggaacccacgaa |
145 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30654833 |
gaacccacttaaaccgtgcatgagctttaccgaagcagaagctagcggccgaagcgagcatctaaacacgcagatctgaacttggactggaacccacgaa |
30654734 |
T |
|
| Q |
146 |
ccggcaaaccacaaagcaacgacaaccttagaaagagcggcagagaaacgttaggaaatcaaacataggtcgcaaaaacaataacgacgagcacaacaaa |
245 |
Q |
| |
|
|| |||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30654733 |
ccagcaaaccacaaagcaatggtaaccttagaaagagcggcagagaaacgttaagaaatcaaacataggtcgcaaaaacaataacgacgagcacaacaaa |
30654634 |
T |
|
| Q |
246 |
tggcagttgcaaaccccacagtgaataat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30654633 |
tggcagttgcaaaccccacagtgaataat |
30654605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 30654859 - 30654898
Alignment:
| Q |
6 |
ggcatcgccgcggtggtcggttgctgttttggtcctttgc |
45 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30654859 |
ggcatcgccgcggtggtcggttgttgttttggtcctttgc |
30654898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 38927811 - 38927753
Alignment:
| Q |
207 |
aacataggtcgcaaaaacaataacgacgagcacaacaaatggcagttgcaaaccccaca |
265 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
38927811 |
aacagaggtcgccaaaacaacaacgacgagcacaaccaatagcggttgcaaaccccaca |
38927753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University