View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_low_12 (Length: 252)
Name: NF21086_low_12
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 41433447 - 41433674
Alignment:
| Q |
10 |
agatgaaaaagtgtactgttgggatgaatcataccttgaaggccattgcagctgaggtctaagccaattacgtgaccagaaattgtgtcacaggtaacaa |
109 |
Q |
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| T |
41433447 |
agatgaaaaagtgtactgttgggatgaatcataccttgaaggccattgcagctgaggtctaagccaattacgtgaccagaaactgtgtcacaggtaacaa |
41433546 |
T |
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| Q |
110 |
acaccaagccatgagtaacaatctgtaccattttgccatgttgatacctctgaataagctagtttaccacaattagtatcagtagtatctatgttgaaag |
209 |
Q |
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| T |
41433547 |
acaccaagccatgagcaacaatctgtaccattttgccatgttgatacctctgcataagctagtttaccacaattagtatcagtagtatctatgttgaaag |
41433646 |
T |
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| Q |
210 |
aggctttgaattgaagcaaggaagaact |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41433647 |
aggctttgaattgaagcaaggaagaact |
41433674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 41446171 - 41446394
Alignment:
| Q |
10 |
agatgaaaaagtgtactgttgggatgaatcataccttgaaggccattgcagctgaggtctaagccaattacgtgaccagaaattgtgtcacaggtaacaa |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41446171 |
agatgaaaaagtgtactgttgggatgaataataccttgaaggtcattgcagctgaggtctaagccaattacgtgaccagaaattgtgtcacaggt----g |
41446266 |
T |
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| Q |
110 |
acaccaagccatgagtaacaatctgtaccattttgccatgttgatacctctgaataagctagtttaccacaattagtatcagtagtatctatgttgaaag |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41446267 |
acaccaagccatgagcaacaatctgtaccattttgccatgttgatacctctgcataagctagtttaccacaattagtatcagtagtatctatgttgaaag |
41446366 |
T |
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| Q |
210 |
aggctttgaattgaagcaaggaagaact |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
41446367 |
aggctttgaattgaagcaaggaagaact |
41446394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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