View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_low_16 (Length: 246)
Name: NF21086_low_16
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 6240360 - 6240565
Alignment:
| Q |
19 |
aatatggttggattatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaa |
118 |
Q |
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| T |
6240360 |
aatatggttggattatgggttgaaagaaatgaagatagaagtatgcaagcctattgcatttctcattgataaaaaaatctgccatagatttagctaagaa |
6240459 |
T |
|
| Q |
119 |
tctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatgtccaact |
218 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
6240460 |
tctaatgcttcatggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacattgtcaaact |
6240559 |
T |
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| Q |
219 |
gaggga |
224 |
Q |
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|||||| |
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| T |
6240560 |
gaggga |
6240565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 6211432 - 6211629
Alignment:
| Q |
26 |
ttggattatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtg |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |
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| T |
6211432 |
ttggattatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgataaaaaaatctgc-atagatttagctaagaatctaatg |
6211530 |
T |
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| Q |
126 |
cttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatgtccaactgaggga |
224 |
Q |
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| T |
6211531 |
cttcatggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacactgtccaactaaggga |
6211629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 23428147 - 23427943
Alignment:
| Q |
8 |
gcatgtcgaagaatatggttggattatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagat |
107 |
Q |
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||||||| || ||||||||||||||||| ||| | |||| ||||||||||||||||||||| || ||| || ||| ||||| | ||| |||||| |
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| T |
23428147 |
gcatgtcaaacaatatggttggattatgtgttaagagaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaa--tatgctatagat |
23428050 |
T |
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| Q |
108 |
ttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatac |
207 |
Q |
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| T |
23428049 |
ttagctaaaaaccaagtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatac |
23427950 |
T |
|
| Q |
208 |
aatgtcc |
214 |
Q |
| |
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| ||||| |
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| T |
23427949 |
attgtcc |
23427943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 17507499 - 17507328
Alignment:
| Q |
37 |
gttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgctt-catggaa |
135 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||||||| |||||| | | ||| ||||||||||| ||||||| |||| || |||| || |
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| T |
17507499 |
gttgaaggaactgaagatagaagtttgcaagcctattgcattcctcattaacaataaatt-tgctatagatttagcaaagaatcaagtgttttcatgaaa |
17507401 |
T |
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| Q |
136 |
gaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcataca |
208 |
Q |
| |
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|||||||||||||| ||| || ||||||||| | |||||||||||||| |||||||| ||||| ||||||| |
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| T |
17507400 |
gaagcaaacacattaaggcaaaatttcactttattagagaacaagtgaacaaagaaatgtttaaggtcataca |
17507328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 1833919 - 1833998
Alignment:
| Q |
105 |
gatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
184 |
Q |
| |
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||||| |||||||||| |||| | |||| ||||| |||||||||||||| |||||||||||| | |||||||| ||||| |
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| T |
1833919 |
gatttggctaagaatccagtgttgcatgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaa |
1833998 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 15489950 - 15489886
Alignment:
| Q |
102 |
atagatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcactt |
166 |
Q |
| |
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|||||||||||||||||| |||| | |||||||||||||||||||||||| || ||||||||| |
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| T |
15489950 |
atagatttagctaagaattcagtgttgcatggaagaagcaaacacattgagacaatatttcactt |
15489886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 16943965 - 16943892
Alignment:
| Q |
111 |
gctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
184 |
Q |
| |
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||||||||||||||| | ||||| |||||||||||||| ||| ||| |||||||| | |||||| || ||||| |
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| T |
16943965 |
gctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
16943892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 17014630 - 17014557
Alignment:
| Q |
111 |
gctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
184 |
Q |
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||||||||||||||| | ||||| |||||||||||||| ||| ||| |||||||| | |||||| || ||||| |
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| T |
17014630 |
gctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
17014557 |
T |
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