View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21086_low_18 (Length: 241)
Name: NF21086_low_18
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_low_18 |
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| [»] scaffold0760 (1 HSPs) |
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| [»] scaffold1004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 24417839 - 24418020
Alignment:
| Q |
17 |
acaatcttgtaattattaatggaaggattatacccaaagctatattcggagagaa---ggtgtttatccatatccaaaggaggcaagatcctgaatgttc |
113 |
Q |
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| T |
24417839 |
acaatcttgtaattattaacggaaggattatacccaaagctatataaggagagaaaaagttgtttatccatacccaaaggaggcaagatcttgaatgttc |
24417938 |
T |
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| Q |
114 |
taatcgaagggttccacaaaatagcaggactgtttaacatggtgaaacaaaggatgccgttgcaagaacacaggcgataagg |
195 |
Q |
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| T |
24417939 |
taatcgaagggttccacaaaatagcagaaccgtcagccatggtgaaacaaaggatgccgttgcaagagcacacgcgataagg |
24418020 |
T |
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Target: scaffold0760 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 4271 - 4174
Alignment:
| Q |
85 |
atccaaaggaggcaagatcctgaatgttctaatcgaagggttccacaaaatagcaggactgtttaacatggtgaaacaaaggatgccgttgcaagaac |
182 |
Q |
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| T |
4271 |
atccaaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaacagcaggaccattatttatggtgaaacaaaggatgccgtcacaagaac |
4174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 1776 - 1688
Alignment:
| Q |
85 |
atccaaaggaggcaagatcctgaatgttctaatcgaagggttccacaaaatagcaggactgtttaacatggtgaaacaaaggatgccgt |
173 |
Q |
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| T |
1776 |
atccaaaggaggcaaaatcttgaatgttctaatggaagggttccacaaaacagcaggaccattatttatggtgaaacaaaggatgccgt |
1688 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 13497829 - 13497782
Alignment:
| Q |
92 |
ggaggcaagatcctgaatgttctaatcgaagggttccacaaaatagca |
139 |
Q |
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| T |
13497829 |
ggaggcaatatcttgaattttctaatggaagggttccacaaaatagca |
13497782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 9587694 - 9587722
Alignment:
| Q |
152 |
atggtgaaacaaaggatgccgttgcaaga |
180 |
Q |
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| T |
9587694 |
atggtgaaacaaaggatgccgttgcaaga |
9587722 |
T |
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