View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21086_low_2 (Length: 552)

Name: NF21086_low_2
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21086_low_2
NF21086_low_2
[»] chr6 (3 HSPs)
chr6 (10-213)||(13263242-13263429)
chr6 (489-537)||(13263649-13263697)
chr6 (248-320)||(13263464-13263536)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 13263242 - 13263429
Alignment:
Q  10 attattctcaaaattaccaactcagaacacatgttattatgaaaaaacaaatttaaacagcttaaatagtccacaatagtttaagtagtccctgatctag 109  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13263242 attattctcaaaattaccaactcagaaca--------tatgaaaaaacaaatttaaacagcttaaatagtccacaatagtttaagaagtccctgatctag 13263333  T
Q  110 tctagaaataatagttaaaaatagtctaatagtccatattggagggattaaattaagtttcacatattcttggagagtaaggtcctttttgtctcatact 209  Q
             ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13263334 a--------aatagttaaaaatagtctaatagtccatatttgagggattaaattaagtttcacatattcttggagagtaaggtcctgtttgtctcatact 13263425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 489 - 537
Target Start/End: Original strand, 13263649 - 13263697
Alignment:
Q  489 tgatgattatttataacacaaaatagtgaaggaaaacaacgtgattatt 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13263649 tgatgattatttataacacaaaatagtgaaggaaaacaacgtgattatt 13263697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 320
Target Start/End: Original strand, 13263464 - 13263536
Alignment:
Q  248 cgaaggtgattttgtcacttataatttgaagttannnnnnnatcgatttcttaaagaaacaaactattttaga 320  Q
    ||||||||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  13263464 cgaaggtgattttgtcatttataatttgaagttatttttttatcgatttcttaaagaaacaaactattttaga 13263536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University