View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21086_low_6 (Length: 420)
Name: NF21086_low_6
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21086_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 5717073 - 5717472
Alignment:
| Q |
13 |
aatatttcttagatcatgaattgatttccttcgaagaaaaaattattatgaattgcttggccaaaccaacttcacacaattacgtgagggacagttgtat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717073 |
aatatttcttagatcatgaattgctttccttcaaagaaaaaaatattatgaattgcttggccaaaccaacttcacacaattacgtgagggacagttgtat |
5717172 |
T |
|
| Q |
113 |
ggtcatactcaatatcacaaat-ataatgtattcatgtgcnnnnnnnngcacttataatttacggtcgggtcgtagtctctaattataaaccctttttaa |
211 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5717173 |
ggtcatactcaatatcacaaataaaaatgtatttatatgcaaataaaagcacttataatttacggtcgggtcgtagtctctaattataaaccctttttga |
5717272 |
T |
|
| Q |
212 |
agaatttacttgtccttaaatataagtcattatgcaatttattacaaccatttannnnnnnaattttcaaatatgtctcgttctaatgttagattaaatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
5717273 |
agaatttacttgtccttaaatataagttattatacaatttactacaaatattta-ttttttaattttcaaatatgtctcattttaatgttaggttaaatt |
5717371 |
T |
|
| Q |
312 |
acatttttaatcccataagatacttttatatttcacttctttaagtcctttcc------------ttccttaagttacaaaaattatacaatttggtctt |
399 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5717372 |
acatttttgctcccttaagatatttttatattccactt-tttaagtcctttccttccttctctggttccttaagttacaaaaattatacaatttggtctt |
5717470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 5683599 - 5683728
Alignment:
| Q |
18 |
ttcttagatcatgaattgatttccttcgaagaaaaaattattatgaattgcttggccaaaccaacttcacacaattacgtgagggacagttgtatggtca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
5683599 |
ttcttagatcatgaattgatttccttcgaagaaaaaattattatgaattgcttggccaaaccaacttcacataattacgtgagggacagttgtgtggtca |
5683698 |
T |
|
| Q |
118 |
tactcaatatcacaaatataatgtattcat |
147 |
Q |
| |
|
| |||||||||||||||| ||||| ||||| |
|
|
| T |
5683699 |
tcctcaatatcacaaataaaatgtcttcat |
5683728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 5738357 - 5738422
Alignment:
| Q |
187 |
gtctctaattataaaccctttttaaagaatttacttgtccttaaatataagtcattatgcaattta |
252 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5738357 |
gtctctaattataaactctttttgaagaatttacttgtcgttaaatataagtcattatgcaattta |
5738422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 399
Target Start/End: Original strand, 5738543 - 5738577
Alignment:
| Q |
365 |
ttccttaagttacaaaaattatacaatttggtctt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5738543 |
ttccttaagttacaaaaattatacaatttagtctt |
5738577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University