View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21086_low_7 (Length: 413)

Name: NF21086_low_7
Description: NF21086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21086_low_7
NF21086_low_7
[»] chr4 (14 HSPs)
chr4 (16-324)||(38828837-38829147)
chr4 (16-323)||(33167527-33167837)
chr4 (16-324)||(8143839-8144152)
chr4 (16-324)||(53060696-53061007)
chr4 (16-324)||(1139425-1139722)
chr4 (16-322)||(6033338-6033639)
chr4 (19-324)||(51543269-51543563)
chr4 (16-321)||(29775649-29775946)
chr4 (168-322)||(44271546-44271703)
chr4 (202-267)||(31761430-31761504)
chr4 (273-322)||(55317773-55317822)
chr4 (268-324)||(31761522-31761578)
chr4 (290-324)||(53061597-53061631)
chr4 (273-322)||(8671716-8671765)
[»] chr6 (7 HSPs)
chr6 (16-324)||(2017931-2018244)
chr6 (16-324)||(29873387-29873700)
chr6 (16-324)||(4792619-4792919)
chr6 (16-324)||(22516903-22517203)
chr6 (92-324)||(2173441-2173656)
chr6 (283-324)||(11623506-11623547)
chr6 (273-322)||(22516288-22516337)
[»] chr2 (16 HSPs)
chr2 (16-324)||(11364168-11364481)
chr2 (16-324)||(43890446-43890759)
chr2 (16-318)||(8667035-8667340)
chr2 (16-324)||(44077953-44078251)
chr2 (17-324)||(23048623-23048921)
chr2 (16-324)||(21632132-21632428)
chr2 (109-324)||(28732754-28732954)
chr2 (202-267)||(16144052-16144117)
chr2 (169-267)||(34055833-34055931)
chr2 (45-114)||(28720810-28720879)
chr2 (282-324)||(51963-52005)
chr2 (273-324)||(23686163-23686214)
chr2 (282-324)||(14983547-14983589)
chr2 (282-324)||(16144010-16144052)
chr2 (273-322)||(23686484-23686533)
chr2 (282-322)||(43891342-43891382)
[»] chr8 (10 HSPs)
chr8 (16-324)||(45309079-45309392)
chr8 (16-324)||(12279750-12280065)
chr8 (16-324)||(8951661-8951977)
chr8 (16-324)||(42074716-42075011)
chr8 (16-192)||(8348512-8348688)
chr8 (205-324)||(306060-306182)
chr8 (282-324)||(8348691-8348733)
chr8 (282-324)||(5916580-5916622)
chr8 (268-322)||(42074115-42074169)
chr8 (273-321)||(305536-305584)
[»] chr5 (8 HSPs)
chr5 (16-324)||(38163135-38163450)
chr5 (7-324)||(4887730-4888050)
chr5 (16-324)||(38973748-38974048)
chr5 (16-324)||(26365492-26365792)
chr5 (202-267)||(41082947-41083012)
chr5 (268-322)||(4888598-4888652)
chr5 (268-322)||(26364881-26364935)
chr5 (291-324)||(22471643-22471676)
[»] chr1 (11 HSPs)
chr1 (8-324)||(4475655-4475974)
chr1 (16-324)||(21259462-21259772)
chr1 (16-324)||(49695702-49696015)
chr1 (16-324)||(51548696-51549008)
chr1 (45-324)||(39277304-39277588)
chr1 (16-324)||(50877294-50877594)
chr1 (16-186)||(50503891-50504061)
chr1 (92-324)||(7057260-7057478)
chr1 (179-238)||(50503807-50503866)
chr1 (268-322)||(4475040-4475094)
chr1 (273-322)||(50504465-50504514)
[»] chr7 (3 HSPs)
chr7 (16-324)||(42437430-42437744)
chr7 (16-324)||(24279026-24279339)
chr7 (16-321)||(30503994-30504291)
[»] chr3 (18 HSPs)
chr3 (16-324)||(51225266-51225578)
chr3 (19-324)||(35494604-35494912)
chr3 (16-324)||(32771512-32771825)
chr3 (34-324)||(36316758-36317053)
chr3 (16-320)||(17256924-17257220)
chr3 (16-322)||(55094048-55094346)
chr3 (90-324)||(33446764-33447001)
chr3 (16-322)||(5635690-5635986)
chr3 (29-321)||(50380421-50380707)
chr3 (109-321)||(49002008-49002224)
chr3 (16-113)||(2182202-2182299)
chr3 (202-324)||(54476391-54476518)
chr3 (106-196)||(10730789-10730879)
chr3 (163-297)||(2182297-2182423)
chr3 (268-322)||(33446121-33446175)
chr3 (273-322)||(5636401-5636450)
chr3 (282-322)||(17257803-17257843)
chr3 (282-322)||(54476999-54477039)
[»] scaffold0854 (2 HSPs)
scaffold0854 (16-324)||(2798-3093)
scaffold0854 (268-322)||(2195-2249)
[»] scaffold0286 (2 HSPs)
scaffold0286 (92-213)||(20478-20600)
scaffold0286 (232-324)||(20385-20478)
[»] scaffold0016 (1 HSPs)
scaffold0016 (7-77)||(200897-200967)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 38829147 - 38828837
Alignment:
Q  16 atcagaacaatcacatat--tgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtt 113  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38829147 atcagaacaatcacatatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtt 38829048  T
Q  114 tacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtg 213  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38829047 tacctgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtg 38828948  T
Q  214 atgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagagcagttttttaaagtgagatgagaggaagaaaagggagaatcagatt 313  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  38828947 gtgaagcagtcgcagaaagcttcaagattttggaacaaagggttttggagagagcagttttttaaggagagatgagaggaagaaaagggagaatcagatt 38828848  T
Q  314 ttggaacacga 324  Q
    |||||||||||    
T  38828847 ttggaacacga 38828837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 33167527 - 33167837
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33167527 atcagaacaatcacatactatttacattattaaaagtataataatagtttctatttatatttcctcatcaactgtgttcctgaatgctacaactagttta 33167626  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  33167627 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagatttaatcagagcaaatccatggtggtgat 33167726  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagggagaatcagat 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| || |||||||||||||||| | ||||||||||||    
T  33167727 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagagaatcagtgttttagagagagatgagaggaagaagatggagaatcagat 33167826  T
Q  313 tttggaacacg 323  Q
    | |||||||||    
T  33167827 tgtggaacacg 33167837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 8143839 - 8144152
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  8143839 atcagaacaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcctgatcaactctgttcctgaatgctacaagtagttta 8143938  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  8143939 cctgtttttggaaaattagaatgccactttacttcctcgtgtttctggttacaatttgaatacgagagagattcaattggagcaaatccatggtggtgat 8144038  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||| || |||||||||||||||| ||||||||||||    
T  8144039 gaagcagtagcagaaagcttcaagattttggaacaaagggttttggagagagagaatcagttttttagagagagatgagaggaagaagagggagaatcag 8144138  T
Q  311 attttggaacacga 324  Q
    ||||| ||||||||    
T  8144139 attttagaacacga 8144152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 53061007 - 53060696
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  53061007 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactgtattcctgaatgctacaactagttta 53060908  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |  ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  53060907 c--gtgtttgaaaaattacaatgtcactttacttcctcgtgtttctggttacaatttgaatacgagagtgattcgatcggagcaaatccatggtggtgat 53060810  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| |||||||     |||| ||||| || |||||||||||||||| ||||||||||||    
T  53060809 gaagtagtggtagaaagcttcaagattttggaacaaagggttttagagagagagaatcagtgttttagagagagatgagaggaagaagagggagaatcag 53060710  T
Q  311 attttggaacacga 324  Q
    |||||| |||||||    
T  53060709 attttgtaacacga 53060696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 1139722 - 1139425
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||    
T  1139722 atcagaccaatcacataatgtttacattattaaaagtataatgatagtttctatttatatttcct----------------gaatgctacaactagttta 1139639  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  1139638 cccgtgtttgaaaaattagaatgccactttacttcctcatgtttctggttacaattcaaatacgagagagattcaatcgaagcaaatccatggtggtgat 1139539  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||      ||||||||| || ||||||||||||||||||||||||||||     
T  1139538 gaagcagtggcagaaaacttcaagattttggaacaaagggttttggagagagggaattagttttttagagagagatgagaggaagaaaagggagaatcat 1139439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 6033338 - 6033639
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6033338 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcatgaatgctacaactagttta 6033437  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6033438 catgtgtttgaaacattaaaatgtcactttacttcctcctgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 6033537  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatga---gaggaagaaaagggagaat 307  Q
                 ||||||||||| |||||||||||||| ||||||||||||     |||| ||||| || |||||||   ||||||||| || ||||||    
T  6033538 -------------aaagcttcaagtttttggaacaaaggattttggagagagagaatcagtgttttagagagagatgagaggaggaagaagagtgagaat 6033624  T
Q  308 cagattttggaacac 322  Q
    |||||||||||||||    
T  6033625 cagattttggaacac 6033639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 51543563 - 51543269
Alignment:
Q  19 agaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtttacat 118  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |    
T  51543563 agaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcttgaatgctacaactagtttacct 51543464  T
Q  119 gtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaa 218  Q
     |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||       
T  51543463 ttgtttgaaaaattagaatgcccctttacttcctcgtgtttttggttacaattcgaatacga--gagattcaatcggagcaaatccatggt-gtgat--- 51543370  T
Q  219 gcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcagatt 313  Q
              | ||| |||||||||||||||||||||||||||||||||     |||| ||||| || |||||||||||||||||| |||||||||||||    
T  51543369 ----------agagcctcaagattttggaacaaagggttttggagagagagaatcagtgttttagagagagatgagaggaagaaaaaggagaatcagatt 51543280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 29775946 - 29775649
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  29775946 atcagaacaatcacatactgtttgcattattaaaagtataatgatagtttatatttatatttcctcatcaactctattcctgaatgctacaactagttta 29775847  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| || |||||| | |||||||||    
T  29775846 cccgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggtaacaattcaaaaacgagagagattcaatcagaacaaatctacggtggtgat 29775747  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 ||||||||||||||||||||||||| |||||||||||||     |||| ||||| || |||||||||||||||| | ||||||||||    
T  29775746 -------------aaagcttcaagattttggaacaaagtgttttggagagagaaaatcagtgttttagagagagatgagaggaagaagatggagaatcag 29775660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 168 - 322
Target Start/End: Original strand, 44271546 - 44271703
Alignment:
Q  168 aattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag 267  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44271546 aattcgaacacgagagagattcaatcggagcaaatccatggcggtgatgaagcagtagcagaaagcttcaagattttggaacaaagggttttggagagag 44271645  T
Q  268 ---cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
       || | ||||| || ||||||||| ||||||  |  ||||||||||||||||||||    
T  44271646 aatcactgttttagagagagatgagaagaagaagggctagaatcagattttggaacac 44271703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 31761430 - 31761504
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagct---------tcaagattttggaacaaagggttttggagagag 267  Q
    |||||||||||||||||||||||||||||||||         |||||||| ||||||||||||||||||||||||    
T  31761430 tccatggtggtgatgaagcagtggcagaaagcttccgaataatcaagattgtggaacaaagggttttggagagag 31761504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 55317773 - 55317822
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  55317773 ttttagagagagatgagaggaagaagagggagaatcagattttggaacac 55317822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 31761522 - 31761578
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||| ||||| || |||| ||||||||||| ||||||||||||||||||||||||||    
T  31761522 cagtgttttagagagagacgagaggaagaagagggagaatcagattttggaacacga 31761578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 53061597 - 53061631
Alignment:
Q  290 aggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||| ||||||||||||||||||||||||||    
T  53061597 aggaagaagagggagaatcagattttggaacacga 53061631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 8671716 - 8671765
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  8671716 ttttagagagagatgagaggaagaagagttagaatcagattttggaacac 8671765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 2017931 - 2018244
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017931 atcagaacaatcacatactgtctacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 2018030  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2018031 cctgtgtttgaaaaattaaaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaattggagcaaatccatggtggtgat 2018130  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     || | ||||| || |||||||||||||||| || |||||||||    
T  2018131 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagagagaatcactgttttagagagagatgagaggaagaagagagagaatcag 2018230  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  2018231 attttggaacacga 2018244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 29873700 - 29873387
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29873700 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 29873601  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29873600 cctgtgtttaaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 29873501  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||||||||| |||||||||||||||||||||||||| | ||||||||||||     |||| ||||| || ||||||| |||||||| ||||||||||||    
T  29873500 gaagcagtggtagaaagcttcaagattttggaacaaaagattttggagagagagaatcagtgttttagagagagatgaaaggaagaagagggagaatcag 29873401  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  29873400 attttggaacacga 29873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 4792919 - 4792619
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4792919 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 4792820  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
      | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||    
T  4792819 tctttgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacagttcgaatacgagagagattcaatcggagcaaatctacggtggtgat 4792720  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 ||| |||||||||||||||||||||| ||||||||||||     |||| ||||| || |||||||||  ||||| ||||||||||||    
T  4792719 -------------aaaacttcaagattttggaacaaaggattttggagagagagaatcagtgttttagagagagatgagaaaaagaagagggagaatcag 4792633  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  4792632 attttggaacacga 4792619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 22516903 - 22517203
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||  |||||||||||||||||| ||||||    
T  22516903 atcagaacaatcacatattgtttacattattaaaagtataatgatattttctatttatatttccccattaactccgttcctgaatgctacaacaagttta 22517002  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22517003 cctgtgtttgaaaaattagaatgtcactttaattcctcgtgtttttggttacaattcaaatacgagagagattcaatcggagcaaatccatggtggtgat 22517102  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 ||| |||||||||||||||||||||||||||||||||||     ||||  |||| || ||||| |||||||||| ||||||||| ||    
T  22517103 -------------aaaacttcaagattttggaacaaagggttttggagagagagaatcagtgatttagagagagataagaggaagaagagggagaattag 22517189  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  22517190 attttggaacacga 22517203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 92 - 324
Target Start/End: Original strand, 2173441 - 2173656
Alignment:
Q  92 ttcctgaatgctacaactagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaa 191  Q
    |||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  2173441 ttcctgaatgctacaattagtttacctctgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcaaatacgagagagattcaa 2173540  T
Q  192 tcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggtttt-ggagagag---cagttttttaaagtgagatg 287  Q
    ||| |||||||||||||||||                   |||||||||||||||||||||||||||| ||||||||   |||| ||||  || ||||||    
T  2173541 tcgaagcaaatccatggtggt-------------------gcttcaagattttggaacaaagggttttgggagagagaatcagtgtttt--agagagatg 2173619  T
Q  288 agaggaagaaaagggagaatcagattttggaacacga 324  Q
    ||||||| || ||||||||||||||||||||||||||    
T  2173620 agaggaaaaagagggagaatcagattttggaacacga 2173656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 11623547 - 11623506
Alignment:
Q  283 agatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  11623547 agatgagagaaagaaaagggagaatcagattttggaacacga 11623506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 22516337 - 22516288
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  22516337 ttttagagagagatgagaggaagaagagctagaatcagattttggaacac 22516288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 11364481 - 11364168
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11364481 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 11364382  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11364381 cctgtgattgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 11364282  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||     |||| ||||| || ||||| |||||||||| ||||||||||||    
T  11364281 gaagcagtggtagaaagcttcaagattttggaacaaagggttttggagagagagaatcagtgttttagagagagattagaggaagaagagggagaatcag 11364182  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  11364181 attttggaacacga 11364168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 43890759 - 43890446
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  43890759 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaacttcgttcatgaatgctacaactagttta 43890660  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||| |    
T  43890659 cctgtgtttgaaaaattagaatgtcactttacttccccgtgtttcaggttacaattcgaatacgagagagattcaatcaaagcaaatccatggtggtggt 43890560  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||     |||| ||||| || |||||||||||||||| |  ||||||| |    
T  43890559 gaagcagtgacagaaagcttcaagattttggaacaaaggattttggagagagagaatcagtgttttagagagagatgagaggaagaagatagagaatcgg 43890460  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  43890459 attttggaacacga 43890446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 8667035 - 8667340
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  8667035 atcataacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgttactgattgctacaactagttta 8667134  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  8667135 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattagaatacgagagagattcaatcagagcaaatccatggtagtgat 8667234  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagggagaatcagat 312  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||   | || ||||| || |||||||||||||||| | |||| | |||||    
T  8667235 gaagaagtggcagaaagcttcaagattttggaacaaagagttttggagagagaatcggtgttttagagagagatgagaggaagaagatggagtaacagat 8667334  T
Q  313 tttgga 318  Q
    ||||||    
T  8667335 tttgga 8667340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 44077953 - 44078251
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  44077953 atcagaacaatcacatattgtttacattatcaaaagtataatgatagtttctatttatattttctcatcaactatgttcgtgaatgctacaactagttta 44078052  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  44078053 cctgtgtttgaaaaattataatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaaattcaatgggagcaaatccacggtggtgat 44078152  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 ||| |||||||||||||||||||||||||||||||||||     |||| ||||  || |||||||||||||||| ||||||||||||    
T  44078153 -------------aaaacttcaagattttggaacaaagggttttggagagagagaatcagtgtttt--agagagatgagaggaagaagagggagaatcag 44078237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 324
Target Start/End: Complemental strand, 23048921 - 23048623
Alignment:
Q  17 tcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtttac 116  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23048921 tcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagtttac 23048822  T
Q  117 atgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatg 216  Q
     |||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||| ||||||||||||     
T  23048821 ctgtgtttgaaaaattagaatgccgctttacttcctcgtgtttct-gttacaatttgaatacctgagagattcaatcggagcaaattcatggtggtgat- 23048724  T
Q  217 aagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcaga 311  Q
                ||| |||||||||||||||||||||||||||||||||||     |||| |||||||| |||||||||||||||  |||||||||||||    
T  23048723 ------------aaaacttcaagattttggaacaaagggttttggagagagagaatcagtgttttaaagagagatgagaggaagaggagggagaatcaga 23048636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 21632428 - 21632132
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    |||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||     |||||||||||||||||||||||||||||||||||    
T  21632428 atcaaaacaatcacatactgtttacattattaaaagtataatgatattttctatttatat-----catcaactttgttcctgaatgctacaactagttta 21632334  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | || ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21632333 cctgagtttgaaaaattagaatgccactttacttcctcgtgtttttggttacaattcgaatacgaaagagattcaatcggagcaaatccatggtggtgat 21632234  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-------cagttttttaaagtgagatgagaggaagaaaagggagaatc 308  Q
           ||      ||||||||||||||||||| || ||||||||||||||       ||||  |||| || |||||||||||||||| | ||||||||    
T  21632233 -------tg------agcttcaagattttggaacgaatggttttggagagagagagaatcagtggtttagagagagatgagaggaagaaga-ggagaatc 21632148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 109 - 324
Target Start/End: Original strand, 28732754 - 28732954
Alignment:
Q  109 tagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatgg 208  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  28732754 tagtttacatgtgtttgaaaaat-agaataccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccattg 28732852  T
Q  209 tggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaaggga 303  Q
    |                   |||||||||||||||||||||||||||||||||||||||     |||| ||||| || |||||||||| |||||   | |    
T  28732853 t-------------------aaagcttcaagattttggaacaaagggttttggagagagagaatcagtgttttagagagagatgagagaaagaagtcgaa 28732933  T
Q  304 gaatcagattttggaacacga 324  Q
    |||||||||||||| ||||||    
T  28732934 gaatcagattttgggacacga 28732954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 16144117 - 16144052
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16144117 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaacgggttttggagagag 16144052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 34055833 - 34055931
Alignment:
Q  169 attcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag 267  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||  ||||||||| |||||||    
T  34055833 attcgaacacgagagagatttgatcggagcaaatccatggtggtgttgaagcagttgcagaaagcttcgagattttgaaaggaagggttttagagagag 34055931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 28720810 - 28720879
Alignment:
Q  45 ttaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttt 114  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  28720810 ttaaaagtataatgataatttctatttatatttactcatcaactctattcctgaatgctacaactagttt 28720879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 51963 - 52005
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  51963 gagatgagaggaagaagagggagaatcagattttggaacacga 52005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 23686214 - 23686163
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    ||||| || |||||||||| ||||| ||||||||||||||||||||||||||    
T  23686214 ttttagagagagatgagagcaagaagagggagaatcagattttggaacacga 23686163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 14983589 - 14983547
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  14983589 gagatgagaggaagaagagggagaatcagattttggaagacga 14983547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Complemental strand, 16144052 - 16144010
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  16144052 gagatgagaggaagaagagggagaattagattttggaacacga 16144010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 23686484 - 23686533
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    ||||| || |||||||||||||||| ||| ||||||||||||| ||||||    
T  23686484 ttttagagagagatgagaggaagaagaggtagaatcagattttagaacac 23686533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 43891342 - 43891382
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  43891342 gagatgagaggaagaagagatagaatcagattttggaacac 43891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 45309079 - 45309392
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45309079 atcagaacaatcacatactgtttacattattaaaagcataatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaactagttta 45309178  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45309179 cccgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 45309278  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||     |||| ||||| || |||||||||||||||| ||||||||||||    
T  45309279 gaagcagtggcataaagcttcaagattttgaaacaaagggttttggagagagagaatcagtgttttagagagagatgagaggaagaagagggagaatcag 45309378  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  45309379 attttggaacacga 45309392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 12279750 - 12280065
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12279750 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttacatttcctcatcaactttgttcctgaatgctacaactagttta 12279849  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  12279850 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcaaatacgagagagattcaatcggagcaaatccgtggtggtgat 12279949  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-------cagttttttaaagtgagatgagaggaagaaaagggagaatc 308  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||| || |||||||||||||||| ||||||||||    
T  12279950 gaaggagtggcagaaagcttcaagattttggaacaaagggttttggagagagagagaatcagtgttttagagagagatgagaggaagaagagggagaatc 12280049  T
Q  309 agattttggaacacga 324  Q
    |||||||| |||||||    
T  12280050 agattttgaaacacga 12280065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 8951977 - 8951661
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataat---gatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagt 112  Q
    ||||||||||||||||| ||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  8951977 atcagaacaatcacatactgtttacattattaaaagtataattatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaactaat 8951878  T
Q  113 ttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt 212  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8951877 ttacctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggt 8951778  T
Q  213 gatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagag-----agcagttttttaaagtgagatgagaggaagaaaagggagaat 307  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||     |  ||| ||||| || |||||||||||||||| |||||||||    
T  8951777 gatgaagcagtggtagaaagcttcaagattttggaacaaagggttttggagagatagaattagtgttttagagagagatgagaggaagaagagggagaat 8951678  T
Q  308 cagattttggaacacga 324  Q
    |||||||||||||||||    
T  8951677 cagattttggaacacga 8951661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 42074716 - 42075011
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||  ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||    
T  42074716 atcagaacaatcgtatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaact---ttcatgaatgctacaactagttta 42074812  T
Q  116 catgtg--tttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtg 213  Q
    | ||||  |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  42074813 cctgtgtttttgaaaaatcagaatgccactttacttcctcgtgtttctggtcacaattcgaatac--gagagattcaatcagagcaaatccatggtggtg 42074910  T
Q  214 atgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||             ||||||| |||||||||||||||||||||||||||||||   |||| ||||| || ||||||| |||||||| ||||||||||||    
T  42074911 at-------------aaagctttaagattttggaacaaagggttttggagagagaaccagtgttttagagagagatgacaggaagaagagggagaatcag 42074997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 8348512 - 8348688
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  8348512 atcagaacaatcacatactgtttacataattaaaagtataatgatagtttctatttatatttcctcatcaattctgttcctgaatgctacaactagttta 8348611  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaat 192  Q
    ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||    
T  8348612 catatgtttgaaaaattagaatgccactttacttcctcgtgtatctggttacaattcgaatacgtgagagaatcaat 8348688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 306060 - 306182
Alignment:
Q  205 atggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| ||  ||||||||||||||| | |    
T  306060 atggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagagaatcagtattttagagaaagatgagaggaagaagatg 306159  T
Q  302 gagaatcagattttggaacacga 324  Q
    ||||||||||||||| |||||||    
T  306160 gagaatcagattttgaaacacga 306182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 8348691 - 8348733
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  8348691 gagatgagaggaagaagagggagaatcagattttggaacacga 8348733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 5916580 - 5916622
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  5916580 gagatgaaaggaagaagagggagaatcagattttggaacacga 5916622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 42074169 - 42074115
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||| ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  42074169 cagtgttttagagagagatgagaggaagaagagctagaatcagattttggaacac 42074115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 305584 - 305536
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaaca 321  Q
    ||||| || |||||||||||||||| ||  |||||||||||||||||||    
T  305584 ttttagagagagatgagaggaagaagagttagaatcagattttggaaca 305536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 38163135 - 38163450
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38163135 atcagaacaatcacatattgtttacattattaaaagtataatgacagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 38163234  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38163235 cctgtgtttgaaaaattagaatgccattttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 38163334  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-------cagttttttaaagtgagatgagaggaagaaaagggagaatc 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||| || ||||||| |||||||| | ||||||||    
T  38163335 gaagcagtggcagaaagcttcaagattttggaacaaaggattttggagagagagagaatcagttttttagagagagatgaaaggaagaagatggagaatc 38163434  T
Q  309 agattttggaacacga 324  Q
    ||||||||||||||||    
T  38163435 agattttggaacacga 38163450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 4888050 - 4887730
Alignment:
Q  7 tccaagaatatcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctaca 106  Q
    ||||| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  4888050 tccaaaaaaatcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcgtcaactcggttcctgaatgctaca 4887951  T
Q  107 actagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccat 206  Q
    |||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4887950 actagtttacctgtgtttgaaaaattagaatgtcacttcacttcctcgtgtttctggttacaattcgaatacgagagtgattcaatcggagcaaatccat 4887851  T
Q  207 ggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagg 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||     || | ||||  || |||||||||||||||| |||    
T  4887850 ggtggtgatgaagcagtggcagaaagctttaagattttggaacaaaggattttggagagagaatatcaatgtttt--agagagatgagaggaagaagagg 4887753  T
Q  302 gagaatcagattttggaacacga 324  Q
    |||||||||||||||||||||||    
T  4887752 gagaatcagattttggaacacga 4887730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 38974048 - 38973748
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38974048 atcagaacaatcacatactgtttacattattaaaagtataaggatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 38973949  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38973948 catgtgtttgaaaaattagaatgtcactttacttccttatgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 38973849  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 |||||||||||||||||||||||||| ||||||||||||     |||| || || || ||||||||||||| || ||||||||||||    
T  38973848 -------------aaagcttcaagattttggaacaaaggattttggagagagagaatcagtgttatagagagagatgagaggaataagagggagaatcag 38973762  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  38973761 attttggaacacga 38973748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 26365492 - 26365792
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  26365492 atcagaacaatcacatactgttttcattattaaaagtataatgatagtttctatttatatttcctcatcaactatattcctgaatgctacaactagttta 26365591  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  26365592 cctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatgggagcaaatccatggcggtgat 26365691  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 ||| |||||||||||||||||||||||||||||||||||     |||| ||||  || ||||||| |||||||| ||||||||||||    
T  26365692 -------------aaaacttcaagattttggaacaaagggttttggagagagagaatcagtgttttggagagagatgaaaggaagaagagggagaatcag 26365778  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  26365779 attttggaacacga 26365792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 202 - 267
Target Start/End: Original strand, 41082947 - 41083012
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag 267  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  41082947 tccatggtggtgatgaagtagtggcagaaagctttaagattttggaacaaagggttttagagagag 41083012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 4888598 - 4888652
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||| ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  4888598 cagtgttttagagagagatgagaggaagaagagctagaatcagattttggaacac 4888652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 26364935 - 26364881
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||| ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  26364935 cagtgttttagagagagatgagaggaagaagagctagaatcagattttggaacac 26364881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 22471643 - 22471676
Alignment:
Q  291 ggaagaaaagggagaatcagattttggaacacga 324  Q
    ||||||| ||||||||||||||||||||||||||    
T  22471643 ggaagaagagggagaatcagattttggaacacga 22471676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 324
Target Start/End: Original strand, 4475655 - 4475974
Alignment:
Q  8 ccaagaatatcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaa 107  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4475655 ccaaaaatatcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaa 4475754  T
Q  108 ctagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatg 207  Q
    ||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4475755 ctagtttacctgtgtttgaaaaattagaatgtcactttacttcttcgtgtttctggttagaattcgaatacgagagagattcaatcggagcaaatccatg 4475854  T
Q  208 gtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagggag 304  Q
    || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||   |||| ||||| || |||||||||||||||| | ||||    
T  4475855 gtagtgatgaagcagtggcagaaaacttcaagattttggaacaaaggattttggagagagaatcagtgttttagagagagatgagaggaagaagatggag 4475954  T
Q  305 aatcagattttggaacacga 324  Q
    ||||||||||||||||||||    
T  4475955 aatcagattttggaacacga 4475974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 21259462 - 21259772
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||    
T  21259462 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctttttatatttcctcatcaactctattcatgaatgctacaactagttta 21259561  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21259562 catgtgtttgaaaa-ttagaatgccactttacttcctcgtgtttatggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 21259660  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagggagaatcagat 312  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||   |||||||||| || | |||||||||||||| ||||||||||||||    
T  21259661 gaagcagtggcagaaagcttcaagattttggaacaaatggttttggagagagaatcagttttttagagagtgatgagaggaagaagagggagaatcagat 21259760  T
Q  313 tttggaacacga 324  Q
    |||| |||||||    
T  21259761 tttgaaacacga 21259772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 49696015 - 49695702
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  49696015 atcagaacaatcacatactgtttacattattaaaagtataatgacagtttctatttatattttctcatcaactctgttcctgaatgctacaactagttta 49695916  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49695915 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagatttaatcggagcaaatccatggtggtgat 49695816  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||     |||| ||||| || |||||||||||||||| ||||||||||||    
T  49695815 gaagcaatggcagaaagcttcaaaattttggaacaaagggttttggagcgagagaatcagtgttttagagagagatgagaggaagaagagggagaatcag 49695716  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  49695715 attttggaacacga 49695702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 51549008 - 51548696
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51549008 atcagaacaatcgcatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 51548909  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51548908 cctgtgtttgaaaaattagaatgccactttacctcctcgtgtttctagttacaattcgaatacgagagagattcaatcggagcaaatccat-gtggtgat 51548810  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagag-----agcagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     | || | | ||| || |||||||||||||||| ||| | ||| ||    
T  51548809 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagatagaatcaatgtcttagagagagatgagaggaagaagaggaataattag 51548710  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  51548709 attttggaacacga 51548696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 45 - 324
Target Start/End: Complemental strand, 39277588 - 39277304
Alignment:
Q  45 ttaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtttacatgtgtttgaaaaattaaaatgccactt 144  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||    
T  39277588 ttaaaagagtaatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagtttacctgtgtttgaaaaattagaatgtcactt 39277489  T
Q  145 tacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagatttt 244  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||  ||||||||||| |||||| |||||    
T  39277488 tacttcctcgtgtttatggttacaattcgaataggagagagattcaatcgtagcaaatccatgttggtgatgaactagtggcagaaaacttcaaaatttt 39277389  T
Q  245 ggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||||||||||      ||| ||||| || |||||||||||||||| | |||||||| |||||||||||||||    
T  39277388 ggaacaaagggttttggagagagaaaattagtgttttagagagagatgagaggaagaagacggagaatcggattttggaacacga 39277304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 50877294 - 50877594
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  50877294 atcagaacaatcacatactgtttacatcattaaaagtataatgatagtttctatttatatttcctcatcaactctatttctgaatgctacaactagttta 50877393  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50877394 cctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatctatggtggtgat 50877493  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 |||||||||||||||| ||||||| | ||||||||||||     |||| ||||| || |||||||||||||||| | ||||||||||    
T  50877494 -------------aaagcttcaagattttagaacaaaagattttggagagagggaatcagtgttttagagagagatgagaggaagaagatggagaatcag 50877580  T
Q  311 attttggaacacga 324  Q
    ||| |||| |||||    
T  50877581 attatggaccacga 50877594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 50504061 - 50503891
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  50504061 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatattttctcatcaactctgttcctgaatgctacaactagttta 50503962  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaga 186  Q
    | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50503961 cctgtgtttgaaaaattagaatgccattttacttcctcgtgtttctggttacaattcgaatacgagagaga 50503891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 92 - 324
Target Start/End: Complemental strand, 7057478 - 7057260
Alignment:
Q  92 ttcctgaatgctacaactagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaa 191  Q
    |||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  7057478 ttcctgaatgctacaattagtttacctgtgtttgaaaaattagaataccactttacctcctcgtgtttttggttacaattcgaatacgagagagattcaa 7057379  T
Q  192 tcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagat 286  Q
    ||||||||||||||||| |||                   ||||||||||||||||||||| ||||||||||||||     |||| ||||| || |||||    
T  7057378 tcggagcaaatccatggcggt-------------------gcttcaagattttggaacaaatggttttggagagagagaatcagtgttttagagagagat 7057298  T
Q  287 gagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||  |||||||||||||||||||||||||    
T  7057297 gagaggaagaagggggagaatcagattttggaacacga 7057260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 50503866 - 50503807
Alignment:
Q  179 gagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50503866 gagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcataaagcttcaa 50503807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 4475094 - 4475040
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||| ||||| || |||||||||||||||| ||| |||||||||||||| |||||    
T  4475094 cagtgttttagagagagatgagaggaagaagaggtagaatcagattttgaaacac 4475040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 50504465 - 50504514
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  50504465 ttttagagagagatgagaggaagaagagctagaatcagattttggaacac 50504514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 42437430 - 42437744
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42437430 atcagaacaatgacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactatgttcctgaatgctacaactagttta 42437529  T
Q  116 catgtgtttgaaaaatta-aaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtga 214  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  42437530 cctgtgtttgaaaaattagaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagaggttcaatcggtgcaaatccatggtggtga 42437629  T
Q  215 tgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatca 309  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||     |||||||||| || |||||||||||||||| |||||||||||    
T  42437630 tgaagcactggcagaaagcttcaagattttggaacaaaggattttggagagagagaatcagttttttagagagagatgagaggaagaagagggagaatca 42437729  T
Q  310 gattttggaacacga 324  Q
    |||||||||||||||    
T  42437730 gattttggaacacga 42437744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 24279026 - 24279339
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24279026 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttatatttatatttcctcatcaactctgttcctgaatgatacaactagttta 24279125  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24279126 cctgtgtttgaaaaattagaatgtcactttacttccttgtgtttctggttacaattcgaatacgagagggattcaatcggagcaaatccatggtggtgat 24279225  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||     |||| ||||| || |||||||||||||||| ||||||||||||    
T  24279226 gaaccagtggcagaaagcttcaagattttggaacaaagggttttggagagagagaatcagtattttagagagagatgagaggaagaagagggagaatcag 24279325  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  24279326 attttggaacacga 24279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 30504291 - 30503994
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30504291 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctacaactagttta 30504192  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |   |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30504191 ctattgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 30504092  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 |||||||||| |||||||||||||||||||| |||||||     |||| ||||| || |||||||||||||||| ||||||||||||    
T  30504091 -------------aaagcttcaaaattttggaacaaagggtttttgagagagagaatcagtgttttagagagagatgagaggaagaagagggagaatcag 30504005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 51225578 - 51225266
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  51225578 atcagaacaatcacatactatttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgtta-tgaatgctacaactagttta 51225480  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51225479 catgtgtttgaaaaattagaatgacactttatttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 51225380  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||     |||| ||||| || |||||| ||||||||| ||||||||||||    
T  51225379 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagagagaatcagtgttttagagagagatgggaggaagaagagggagaatcag 51225280  T
Q  311 attttggaacacga 324  Q
    |||||| |||||||    
T  51225279 attttgaaacacga 51225266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 35494604 - 35494912
Alignment:
Q  19 agaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtttacat 118  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |    
T  35494604 agaacaatcacatactatttacattattaaaagtataatgatagtttcaatttatatttcctcatcatctctgttcctgaatgctacaactagtttacct 35494703  T
Q  119 gtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaa 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  35494704 gtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatac--gagagattcaatcggagcaaatccatggtggtgatgaa 35494801  T
Q  219 gcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcagatt 313  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||| || |||||||||||||||| |||||||||||||||    
T  35494802 gtagtggcagaaagcttcaagattttggaacaaagggttttggagagagagaatcagttttttagagagagatgagaggaagaagagggagaatcagatt 35494901  T
Q  314 ttggaacacga 324  Q
    ||  |||||||    
T  35494902 ttcaaacacga 35494912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 32771512 - 32771825
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||    
T  32771512 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctattcctgaatgctacaactagatta 32771611  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    ||||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||||    
T  32771612 catgtgtttaaaaaattagaatgtcactttacttcctcgtgattctggttacaattcgaatatgagagagattcaatcagagcaaattcatggtgttgat 32771711  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||     |||| ||||| || |||||||||||||||| | ||||||| ||    
T  32771712 gaagcagtgacagaaagcttcaagattttggaacaaagagttttggagagagagaatcagtgttttagagagagatgagaggaagaagatggagaattag 32771811  T
Q  311 attttggaacacga 324  Q
    ||||||||||||||    
T  32771812 attttggaacacga 32771825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 34 - 324
Target Start/End: Original strand, 36316758 - 36317053
Alignment:
Q  34 tgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtttacatgtgtttgaaaaatta 133  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  36316758 tgtttacattattaaaagtataatgatactttatatttatatttcctcatcaactctgttcctgaatgctacaactagtttacttgtgtttgaaaaatta 36316857  T
Q  134 aaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcagaaagc 233  Q
     ||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  36316858 gaatgccactttactttctcgtgtttcagattacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcggtggcaaaaagc 36316957  T
Q  234 ttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||||||||| |||||||||||     |||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||    
T  36316958 ttcaagattttggaacaaagggctttggagagagagaatcagtgttttagagagagatgagaggaagaagagggagaatcagattttggaacacga 36317053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 17257220 - 17256924
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  17257220 atcagaacaatcaaataatgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctaaatgctacaactagttta 17257121  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17257120 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaatttgaatacgagagagattcaatcggagcaaatccatggtggtgat 17257021  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 |||||||||||||||||||||||||||||||||||||||     || | ||||| || |||||||||||||||| ||||||||||||    
T  17257020 -------------aaagcttcaagattttggaacaaagggttttggagagagagaatcaatattttagagagagatgagaggaagaagagggagaatcag 17256934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 55094048 - 55094346
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  55094048 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcatgaatgctacaactagttta 55094147  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55094148 catgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 55094247  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaagaaaagggagaatcag 310  Q
                 |||||||||||||||||||||||||| |||||||| |||     | || ||||| || |||||||||||||||| ||||||||| ||    
T  55094248 -------------aaagcttcaagattttggaacaaaggattttggagggagagaatcggtgttttagagagagatgagaggaagaagagggagaattag 55094334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 90 - 324
Target Start/End: Original strand, 33446764 - 33447001
Alignment:
Q  90 tgttcctgaatgctacaactagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattc 189  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33446764 tgttcctgaatgctacaactagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttctggttacaattcgaatacgagaaagattc 33446863  T
Q  190 aatcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagat 286  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||   |||| ||||| || |||||    
T  33446864 aatcggagcaaatccatggtggtgatgaagcagtgacagaaagcttcaagattttggaacaaagggttttggagaaagaatcagtgttttagagagagat 33446963  T
Q  287 gagaggaagaaaagggagaatcagattttggaacacga 324  Q
    ||| ||||||| ||||||||||||||||||||||||||    
T  33446964 gagtggaagaagagggagaatcagattttggaacacga 33447001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 5635986 - 5635690
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||| |||| || || |||||||||||||||    
T  5635986 atcagaacaatcacatattgtttacattattaaaagtataatggtagtttctatttatattccatcatcaactctgtttctaaaagctacaactagttta 5635887  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  5635886 cctgtgtttgaaaaattagaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaattcatagtggtgat 5635787  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag---cagttttttaaagtgagatgagaggaagaaaagggagaatcagat 312  Q
                 |||||||||||||||| ||||||||||||||||||||||   || | ||||| || |||||| ||||||||| ||||||||||||||    
T  5635786 -------------aaagcttcaagattttagaacaaagggttttggagagagaatcaatgttttagagagagatgggaggaagaagagggagaatcagat 5635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 50380707 - 50380421
Alignment:
Q  29 catattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtttacatgtgtttgaaa 128  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||    
T  50380707 catactgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgttacaactagtttacctgtgtttgaaa 50380608  T
Q  129 aattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcag 228  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||                 
T  50380607 aattagaatgccattttacttcctcgtgtttctggtcacaattcgaatacgagagatattcaatcggagcaaatccatggtggtgat------------- 50380521  T
Q  229 aaagcttcaagattttggaacaaagggttttggagagag-------cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaaca 321  Q
    |||||||||||||||||||||||||||||||||||||||       |||| ||||| |  |||||||||||||||| |||||  ||||||||||| ||||    
T  50380520 aaagcttcaagattttggaacaaagggttttggagagagagaatatcagtgttttagaaagagatgagaggaagaagagggattatcagattttgaaaca 50380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 109 - 321
Target Start/End: Complemental strand, 49002224 - 49002008
Alignment:
Q  109 tagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatgg 208  Q
    |||||||| |||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  49002224 tagtttacctgtgtttgaaaaattagaatgtcactttacttcctcgtgtttttagttacaattcgaatacgagagagattcaatcggagcaaatccatgg 49002125  T
Q  209 tggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttg-gagagag---cagttttttaaagtgagatgagaggaagaaaagggag 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||   |||| ||||| || |||||||||||||||| ||||||    
T  49002124 tggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggtttggagagagagaatcagtgttttagagagagatgagaggaagaagagggag 49002025  T
Q  305 aatcagattttggaaca 321  Q
    |||||||||||||||||    
T  49002024 aatcagattttggaaca 49002008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 2182202 - 2182299
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagtt 113  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  2182202 atcagaacaatcacatactgtttacattattaaaagtataatgatagtttcaatttatatttcctcatcaactctgttcctgaatgctacaactagtt 2182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 54476518 - 54476391
Alignment:
Q  202 tccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-----cagttttttaaagtgagatgagaggaaga 296  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||||| |||||||||| ||||     |||| ||||| || |||||||||||||||    
T  54476518 tccatggtggtgatgaaatagtggcagaaatcttcaagattttggaacaaggggttttggacagagagaatcagtgttttagagagagatgagaggaaga 54476419  T
Q  297 aaagggagaatcagattttggaacacga 324  Q
    | ||||||||||||||||||||||||||    
T  54476418 agagggagaatcagattttggaacacga 54476391  T

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Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 10730879 - 10730789
Alignment:
Q  106 aactagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcgga 196  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||    
T  10730879 aactagtttacctgtgtttgaaaaattagaattccactttacttcctcgtgtttttggttaaaatttgaatacgagagagattcaatcgga 10730789  T

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Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 2182297 - 2182423
Alignment:
Q  163 gttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgatgaagcagtggcagaaagcttcaagattttggaacaaagggttttgga 262  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||    
T  2182297 gttacaattcgaatacgagagagatttaatcggagcaaatccatggtggtgat-------------aaagcttcaagattttggaacaaagggttttgga 2182383  T
Q  263 gagag-----cagttttttaaagtgagatgagaggaagaa 297  Q
    |||||     |||| ||||| || ||||||||||||||||    
T  2182384 gagagagaatcagtgttttagagagagatgagaggaagaa 2182423  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 33446175 - 33446121
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||| ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  33446175 cagtgttttagagagagatgagaggaagaagagctagaatcagattttggaacac 33446121  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 5636401 - 5636450
Alignment:
Q  273 ttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    ||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  5636401 ttttagagagagatgagaggaagaagagctagaatcagattttggaacac 5636450  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 17257803 - 17257843
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||||||||||||||||||  ||||| ||||||||||||||    
T  17257803 gagatgagaggaagaaaagctagaataagattttggaacac 17257843  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 54476999 - 54477039
Alignment:
Q  282 gagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  54476999 gagatgagaggaagaagagttagaatcagattttggaacac 54477039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 2798 - 3093
Alignment:
Q  16 atcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatatttcctcatcaactttgttcctgaatgctacaactagttta 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||            
T  2798 atcagaacaatcacatattgtttacattattaaaagtataatgatagtttctatttatatttcctcatcaactctgttcctgaatgctgcaa-------- 2889  T
Q  116 catgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 215  Q
                |||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2890 ------------aaattagaatgtcactttacttcctcgtctttctagttacaattcgaatacgagagagattcaatcggagcaaatccatggtggtgat 2977  T
Q  216 gaagcagtggcagaaagcttcaagattttggaacaaagggttttggagagag-------cagttttttaaagtgagatgagaggaagaaaagggagaatc 308  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||       |||| ||||| || |||||||||||||||| |||||||||     
T  2978 gaagcagtggcagaaaacttcaagtttttggaacaaagggttttggagagagagagagtcagtgttttagagagagatgagaggaagaagagggagaata 3077  T

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Target: scaffold0854; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 2249 - 2195
Alignment:
Q  268 cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacac 322  Q
    |||||||||| || |||||||||||||||| ||  ||||||||||||||||||||    
T  2249 cagttttttagagagagatgagaggaagaagagctagaatcagattttggaacac 2195  T

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Target: scaffold0286 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 92 - 213
Target Start/End: Complemental strand, 20600 - 20478
Alignment:
Q  92 ttcctgaatgctacaactagtttacatgtgtttgaaaaattaaaatgccactttacttcctcgtgtttctggttacaattcgaatacgagagagattcaa 191  Q
    |||||||||||||||| |||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  20600 ttcctgaatgctacaattagtttacctctgtttgaaaaattagaatgccactttacttccttgtgtttctggttacaattcaaatacgagagagattcaa 20501  T
Q  192 tcgga-gcaaatccatggtggtg 213  Q
      ||| || ||||||||||||||    
T  20500 gtggacgcgaatccatggtggtg 20478  T

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Target: scaffold0286; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 20478 - 20385
Alignment:
Q  232 gcttcaagattttggaacaaagggttttgg-agagag---cagttttttaaagtgagatgagaggaagaaaagggagaatcagattttggaacacga 324  Q
    |||||||||||||||||||||||||||||| ||||||   |||| ||||| ||  |||||||||||| || ||||||||||||||||||||||||||    
T  20478 gcttcaagattttggaacaaagggttttgggagagagaatcagtgttttagag--agatgagaggaa-aagagggagaatcagattttggaacacga 20385  T

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Target: scaffold0016 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 200897 - 200967
Alignment:
Q  7 tccaagaatatcagaacaatcacatattgtttacgttattaaaagtataatgatagtttctatttatattt 77  Q
    ||||| |||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||| |||||    
T  200897 tccaaaaatatcagaacaatcacatactatttacattattaaaagtatagtgatagtttctatttctattt 200967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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