View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21087_high_1 (Length: 843)

Name: NF21087_high_1
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21087_high_1
NF21087_high_1
[»] chr4 (1 HSPs)
chr4 (1-825)||(22569109-22569951)


Alignment Details
Target: chr4 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 1 - 825
Target Start/End: Complemental strand, 22569951 - 22569109
Alignment:
Q  1 ttaaacagtatcaggcatattaattaagcagatttattctttcagagttcagaccctcattatgcagtacttaaattaattaagacacgtcaacactcat 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  22569951 ttaagcagtatcaggcatattaattaagcagatttattctttcaga-------ccctcattatgcagtacttaaattaattaagacacgtcaacactcat 22569859  T
Q  101 tgggtggagaatatcctaaaatgcaactatccaccataacagccttatgtt--attgaggcacttctgttctgaataactagccaaattaaaaatcaaga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||| ||||||||||||||||||||    
T  22569858 tgggtggagaatatcctaaaatgcaactatccaccataacagccttatattttattaaggcacttctgttctgaataaccagccaaattaaaaatcaaga 22569759  T
Q  199 gc-----------------tctacaaagtacaaaatatatataaatctaattattatctattttcatttacaacacttactgtnnnnnnnnnnngtgaac 281  Q
    ||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||    
T  22569758 gcaattaaaaatcaagagctctacaaagtacaaaatatatataaatctaattattatctattttcatttacaacacttactgtaaaaaaaaa--gtgaac 22569661  T
Q  282 aacattataagaagactttagtgagttatgcaactaagtacctaaccaacaataataccgttaattagttagttgaactcccatatcatatatattacaa 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22569660 aacattataagaagactttagtgagttatgcaactaagtacctaaccaacaagaataccgttaattagttagttgaactcccatatcatatatattacaa 22569561  T
Q  382 agggtttactcaagttacacactatctaatatctatcatttcttctcctagtttccatccaagagaccaatatcaccatggaacaacctgcatcagattc 481  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22569560 agggtttactcaagtcacacactatctaatatctatcatttcttctcctagtttccatccaagagaccaatatcaccatggaacaacctgcaccagattc 22569461  T
Q  482 tccaacgcagcaacaagaatcaatgcaagactctccttctcccccacaccaacaaccaccatccgactctcttccaccgccacagcaacaaccacgtgac 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22569460 tccaacgcagcaacaagaatcaatgcaagactctccttctcccccacaccaacaaccaccatccgactctcttccactgccacagcaacaaccacgtgac 22569361  T
Q  582 tctcctcagcagaaaatacaatctgcacaatactcaccagaataatggctgccgcatccaagagtatccagggaggttcttacattggaaatagcttttc 681  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22569360 tctcctcagcagaaaatacaatctgcacaaaactcaccagaataatggctgccgcatccaagagtatccagggaggttcttacattggaaatagcttttc 22569261  T
Q  682 aatcgcactcacggctgacatatcgaagggtgtatagggtcctcgtctttatgaggattctcggtcatcatcgccaagaccaaca--------catggaa 773  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||    
T  22569260 aatcgcactcacggctgacatatggaagggtgtatagggtcctcgtctttatgaggattctcggtcatcatcaccaagaccaacactcgtcttcatggaa 22569161  T
Q  774 agtatcattggtaccgtgttttccaacttcgagtattaaagctgattcaaac 825  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22569160 agcatcattggtaccgtgttttccaacttcgagtattaaagctgattcaaac 22569109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University