View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_high_10 (Length: 480)
Name: NF21087_high_10
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 25 - 461
Target Start/End: Original strand, 34615852 - 34616288
Alignment:
| Q |
25 |
gagtgagatgaagatacgttacgtgcatataatgttactcttatgggttagttagagctaaggaatcgtgtctgtcatacatactcaacaaaagaaaaat |
124 |
Q |
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| T |
34615852 |
gagtgatatgaagatacgttacgtgcatataatgttactgttatgggttagttagagctaaggaatcgtttctgtcatacatactcaacaaaagaaaaat |
34615951 |
T |
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| Q |
125 |
attttaaggaacccaagcttgtctaaagtcaacacagtatacatatttagctgaactaccactacctttttcggtgttttacacagtttgtaggtaagga |
224 |
Q |
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| T |
34615952 |
attttaaggaacccaagcttgtctaaagtcaacacagtatacatatttagctgaactaccactacctttttcggtgttttacacagtttgtaggtaagga |
34616051 |
T |
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| Q |
225 |
aggtagccacacaccacagtacatattgcagaaccaaccaatccacccccaacagtattttcacaaatagtattcaaataaggaatgtctgcataaatca |
324 |
Q |
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| T |
34616052 |
aggtagccacacaccacagtacatattgcagaaccaaccaatccacccccaacagtattttcacaattagtattcaaataaggaatgtctgcataaagca |
34616151 |
T |
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| Q |
325 |
tcaacaaaagggtgttaccattttttatcacaaaaatctgagagaacactactaagcaaataactagtattcatgtcagatcatcagagacagagaatcc |
424 |
Q |
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| T |
34616152 |
tcaacaaaagggtgttaccattttttatcacaaaaatctgagagaacactactaagcaaataactagtattcatgtcagatcatcagagacagagaatcc |
34616251 |
T |
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| Q |
425 |
atcctatgaatgtggaaacaaaaccacaccctaggac |
461 |
Q |
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| T |
34616252 |
accctatgaatgtggaaacaaaaccacaccctaggac |
34616288 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 2476172 - 2476269
Alignment:
| Q |
174 |
gctgaactaccactacctttttcggtgttttacacagtttgtaggtaaggaaggtagccacacaccacagtacatattgcagaaccaaccaatccacc |
271 |
Q |
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| T |
2476172 |
gctgaactaccactatctttttgagatttacacacggtttgtaggtaaggaaggtaaccacataccaaagtacctcttgtggaaccaaccaatccacc |
2476269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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