View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_high_16 (Length: 459)
Name: NF21087_high_16
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 48209799 - 48209438
Alignment:
| Q |
1 |
agaagcattgaaacatttctgctcatgtatcaccttgcttctgtgttaaggaaggagagctttgatctagctagctaatggttacgtaattaagtttcag |
100 |
Q |
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| T |
48209799 |
agaagcattgaaacatttctgctcatgtatcaccttgcttctgtgttaaggaagaagagctttgatctagctagctaatggttacgtaattaagtttcag |
48209700 |
T |
|
| Q |
101 |
atttcttatgttcattcttcattttttctatatgaatctctacgtaccacattgcagctcaatagcatacttagcatgttataagtttaatgtgcaactt |
200 |
Q |
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| T |
48209699 |
atttcttatgttcattcttcattttttctatatgaatctctacgtacaacattgcagctcaatagcatacttagcatgttataagtttaatgtgcaactt |
48209600 |
T |
|
| Q |
201 |
tgattttaacttaaatttgagtcctaaattctttaataatattgatatgtatctgaattattggttcatgaattccagtaagtgtccataaaatgaatga |
300 |
Q |
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| T |
48209599 |
tgattttaacttaaatttgagtccttaattctttaataatattgatatatatctgaattattggttcatgaattccagtaagtgtccataaaatgaatga |
48209500 |
T |
|
| Q |
301 |
ttgaacttaccccctagatatgcttataccaataattcagatagtaacttatagcatgctaa |
362 |
Q |
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| T |
48209499 |
ttgaacttaccccctagatttgcttataccaataattcagatagtaacttatagcatgctaa |
48209438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 422
Target Start/End: Complemental strand, 48208448 - 48208390
Alignment:
| Q |
364 |
tgctaagtatgctatttattcaacattttgagccttatccattgtgaatagctctccgg |
422 |
Q |
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| T |
48208448 |
tgctaagtatgctatttattcaacattctgagccttatccattgtgaatagctctccgg |
48208390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 48205376 - 48205260
Alignment:
| Q |
58 |
agctttgatctagctagctaatgg---ttac--gtaattaagtttcagatttcttatgttcattcttcattttttctatatgaatctctacgtaccacat |
152 |
Q |
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|||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||| || ||||||| |||| ||||||||| |||| |||| |
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| T |
48205376 |
agctttgatccagctagctaatggaagttacatgtaattatgtttcagatttcttatgttttttgttcatttgg-ctatgtgaatctctttgtacaacat |
48205278 |
T |
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| Q |
153 |
tgcagctcaatagcatac |
170 |
Q |
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||||| |||||||||||| |
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| T |
48205277 |
tgcagttcaatagcatac |
48205260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 32586700 - 32586647
Alignment:
| Q |
5 |
gcattgaaacatttctgctcatgtatcaccttgcttctgtgttaaggaaggaga |
58 |
Q |
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||||| ||||||| | ||||||||||||||||||||| |||| ||||||||||| |
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| T |
32586700 |
gcattcaaacattccagctcatgtatcaccttgcttccgtgtcaaggaaggaga |
32586647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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