View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21087_high_19 (Length: 433)
Name: NF21087_high_19
Description: NF21087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21087_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 40672692 - 40673097
Alignment:
| Q |
11 |
cacagatacctataatatagtaactaataagtgtaaatcaataatactaagtgttagtgcatgttacaccttgaagtagagcagctggggttgaattgta |
110 |
Q |
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| T |
40672692 |
cacagatacctataatatagtaactaataagtgtaaatcaataatactaagtgttagtgcatgttacaccttgaagtagagcagctggggttgaattgta |
40672791 |
T |
|
| Q |
111 |
gacatttttcgaaattccaaagcttagtgggtagcaaacatacttcaaatgtttccgattggaaacaaagatataactcttgaacccgatggaagtgaac |
210 |
Q |
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| T |
40672792 |
gacatttttcgaaattccaaagcttagtgggtagcaaacatacttcaaatgtttccgattggaaacaaagatataactcttgaacccgatggaagtgaac |
40672891 |
T |
|
| Q |
211 |
actttgagcccgaatgcaacccttccatgtttacggcgccttcgaacaatgctctcggccaagtgaagtggctcatacgagtctactttcagcttcagct |
310 |
Q |
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| T |
40672892 |
actttgagcccgaatgcaacccttccatgttcacggcgcctccgaacaatgctctcggccaagtgaagtggctcatacgagtctactttcagcttcagct |
40672991 |
T |
|
| Q |
311 |
caatcatgctgccgttgaaaggttgaagagttgatgtcttgagagtcacatcgccatattcatctctgtaaaatacatcagcattgagtgtttcttggta |
410 |
Q |
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| T |
40672992 |
caatcatgctgccgttgaaaggttgaatagttgatgtcttgagagtcacatcgccatattcatctctgtaaaatacatcagcattgagtgtttcttggta |
40673091 |
T |
|
| Q |
411 |
tgagac |
416 |
Q |
| |
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|||||| |
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| T |
40673092 |
tgagac |
40673097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 105 - 416
Target Start/End: Original strand, 40683106 - 40683417
Alignment:
| Q |
105 |
attgtagacatttttcgaaattccaaagcttagtgggtagcaaacatacttcaaatgtttccgattggaaacaaagatataactcttgaacccgatggaa |
204 |
Q |
| |
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|||||||||||||| |||||| ||||||| ||||||||||||||| ||||||| | ||| ||||| ||||||||| |||| ||| ||||||| |
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| T |
40683106 |
attgtagacattttgcgaaataacaaagctaagtgggtagcaaacaaccttcaaagttatccagttggattcaaagatatctttcttaaactggatggaa |
40683205 |
T |
|
| Q |
205 |
gtgaacactttgagcccgaatgcaacccttccatgtttacggcgccttcgaacaatgctctcggccaagtgaagtggctcatacgagtctactttcagct |
304 |
Q |
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||||||| |||||| |||||| ||||||||||||||| ||||| || ||| |||| | | | || |||| |||||| |||||||||| ||||||| |
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| T |
40683206 |
gtgaacaatttgagaccgaattcaacccttccatgttctcggcggctacgataaatgttgttagtcacgtga---ggctcacacgagtctaccttcagct |
40683302 |
T |
|
| Q |
305 |
tcagctcaatcatgctgccgttgaaaggttgaagagttgatgtcttgagagtca-cat--cgccatattcatctctgtaaaatacatcagcattgagtgt |
401 |
Q |
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||| |||||||||||| |||||||||||||||| ||||||||| || ||||| | || ||||||||||||| ||||||||| ||||||| |||||| |
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| T |
40683303 |
tcatctcaatcatgctaccgttgaaaggttgaatagttgatgtatttagagtgatgatgccgccatattcatccatgtaaaatatctcagcatcgagtgt |
40683402 |
T |
|
| Q |
402 |
ttcttggtatgagac |
416 |
Q |
| |
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|||||||||||||| |
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| T |
40683403 |
atcttggtatgagac |
40683417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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